Literature DB >> 30420340

Next-Generation Sequencing in Autism Spectrum Disorder.

Stephan J Sanders1.   

Abstract

Autism spectrum disorder (ASD) is a common disorder that causes substantial distress. Heritability studies consistently show a strong genetic contribution, raising the hope that identifying ASD-associated genetic variants will offer insights into neurobiology and ultimately therapeutics. Next-generation sequencing (NGS) enabled the identification of disruptive variants throughout protein-coding regions of the genome. Alongside large cohorts and novel statistical methods, these NGS methods revolutionized ASD gene discovery. NGS methods have also contributed substantially to functional genetic data, such as gene expression, used to understand the neurobiological consequences of disrupting these ASD-associated genes. These functional data are also critical for annotating the noncoding genome as whole-genome sequencing (WGS) begins to provide initial insights outside of protein-coding regions. NGS methods still have a major role to play, as do similarly transformative advances in stem cell and gene-editing methods, in translating genetic discoveries into a first generation of ASD therapeutics.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 30420340      PMCID: PMC6671934          DOI: 10.1101/cshperspect.a026872

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  102 in total

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Review 3.  Infantile autism and associated autosomal chromosome abnormalities: a register-based study and a literature survey.

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Journal:  J Child Psychol Psychiatry       Date:  1999-03       Impact factor: 8.982

4.  Paternally inherited cis-regulatory structural variants are associated with autism.

Authors:  William M Brandler; Danny Antaki; Madhusudan Gujral; Morgan L Kleiber; Joe Whitney; Michelle S Maile; Oanh Hong; Timothy R Chapman; Shirley Tan; Prateek Tandon; Timothy Pang; Shih C Tang; Keith K Vaux; Yan Yang; Eoghan Harrington; Sissel Juul; Daniel J Turner; Bhooma Thiruvahindrapuram; Gaganjot Kaur; Zhuozhi Wang; Stephen F Kingsmore; Joseph G Gleeson; Denis Bisson; Boyko Kakaradov; Amalio Telenti; J Craig Venter; Roser Corominas; Claudio Toma; Bru Cormand; Isabel Rueda; Silvina Guijarro; Karen S Messer; Caroline M Nievergelt; Maria J Arranz; Eric Courchesne; Karen Pierce; Alysson R Muotri; Lilia M Iakoucheva; Amaia Hervas; Stephen W Scherer; Christina Corsello; Jonathan Sebat
Journal:  Science       Date:  2018-04-20       Impact factor: 47.728

5.  Associated medical disorders and disabilities in children with autistic disorder: a population-based study.

Authors:  Marko Kielinen; Heikki Rantala; Eija Timonen; Sirkka-Liisa Linna; Irma Moilanen
Journal:  Autism       Date:  2004-03

6.  Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.

Authors:  Tychele N Turner; Fereydoun Hormozdiari; Michael H Duyzend; Sarah A McClymont; Paul W Hook; Ivan Iossifov; Archana Raja; Carl Baker; Kendra Hoekzema; Holly A Stessman; Michael C Zody; Bradley J Nelson; John Huddleston; Richard Sandstrom; Joshua D Smith; David Hanna; James M Swanson; Elaine M Faustman; Michael J Bamshad; John Stamatoyannopoulos; Deborah A Nickerson; Andrew S McCallion; Robert Darnell; Evan E Eichler
Journal:  Am J Hum Genet       Date:  2015-12-31       Impact factor: 11.025

7.  Patterns and rates of exonic de novo mutations in autism spectrum disorders.

Authors:  Benjamin M Neale; Yan Kou; Li Liu; Avi Ma'ayan; Kaitlin E Samocha; Aniko Sabo; Chiao-Feng Lin; Christine Stevens; Li-San Wang; Vladimir Makarov; Paz Polak; Seungtai Yoon; Jared Maguire; Emily L Crawford; Nicholas G Campbell; Evan T Geller; Otto Valladares; Chad Schafer; Han Liu; Tuo Zhao; Guiqing Cai; Jayon Lihm; Ruth Dannenfelser; Omar Jabado; Zuleyma Peralta; Uma Nagaswamy; Donna Muzny; Jeffrey G Reid; Irene Newsham; Yuanqing Wu; Lora Lewis; Yi Han; Benjamin F Voight; Elaine Lim; Elizabeth Rossin; Andrew Kirby; Jason Flannick; Menachem Fromer; Khalid Shakir; Tim Fennell; Kiran Garimella; Eric Banks; Ryan Poplin; Stacey Gabriel; Mark DePristo; Jack R Wimbish; Braden E Boone; Shawn E Levy; Catalina Betancur; Shamil Sunyaev; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Bernie Devlin; Richard A Gibbs; Kathryn Roeder; Gerard D Schellenberg; James S Sutcliffe; Mark J Daly
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

8.  Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.

Authors:  Brian J O'Roak; Laura Vives; Santhosh Girirajan; Emre Karakoc; Niklas Krumm; Bradley P Coe; Roie Levy; Arthur Ko; Choli Lee; Joshua D Smith; Emily H Turner; Ian B Stanaway; Benjamin Vernot; Maika Malig; Carl Baker; Beau Reilly; Joshua M Akey; Elhanan Borenstein; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Jay Shendure; Evan E Eichler
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

9.  De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder.

Authors:  Shan Dong; Michael F Walker; Nicholas J Carriero; Michael DiCola; A Jeremy Willsey; Adam Y Ye; Zainulabedin Waqar; Luis E Gonzalez; John D Overton; Stephanie Frahm; John F Keaney; Nicole A Teran; Jeanselle Dea; Jeffrey D Mandell; Vanessa Hus Bal; Catherine A Sullivan; Nicholas M DiLullo; Rehab O Khalil; Jake Gockley; Zafer Yuksel; Sinem M Sertel; A Gulhan Ercan-Sencicek; Abha R Gupta; Shrikant M Mane; Michael Sheldon; Andrew I Brooks; Kathryn Roeder; Bernie Devlin; Matthew W State; Liping Wei; Stephan J Sanders
Journal:  Cell Rep       Date:  2014-10-02       Impact factor: 9.995

10.  Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia.

Authors:  S E Ellis; R Panitch; A B West; D E Arking
Journal:  Transl Psychiatry       Date:  2016-05-24       Impact factor: 6.222

View more
  7 in total

Review 1.  Intellectual disability and autism spectrum disorders 'on the fly': insights from Drosophila.

Authors:  Mireia Coll-Tané; Alina Krebbers; Anna Castells-Nobau; Christiane Zweier; Annette Schenck
Journal:  Dis Model Mech       Date:  2019-05-13       Impact factor: 5.758

2.  Association of genes with phenotype in autism spectrum disorder.

Authors:  Sabah Nisar; Sheema Hashem; Ajaz A Bhat; Najeeb Syed; Santosh Yadav; Muhammad Waqar Azeem; Shahab Uddin; Puneet Bagga; Ravinder Reddy; Mohammad Haris
Journal:  Aging (Albany NY)       Date:  2019-11-19       Impact factor: 5.682

Review 3.  Genetic and epigenetic analyses of panic disorder in the post-GWAS era.

Authors:  Yoshiro Morimoto; Shinji Ono; Naohiro Kurotaki; Akira Imamura; Hiroki Ozawa
Journal:  J Neural Transm (Vienna)       Date:  2020-05-09       Impact factor: 3.575

Review 4.  Dendritic Integration Dysfunction in Neurodevelopmental Disorders.

Authors:  Andrew D Nelson; Kevin J Bender
Journal:  Dev Neurosci       Date:  2021-06-17       Impact factor: 3.421

Review 5.  Antigenic Targets of Patient and Maternal Autoantibodies in Autism Spectrum Disorder.

Authors:  Rut Mazón-Cabrera; Patrick Vandormael; Veerle Somers
Journal:  Front Immunol       Date:  2019-07-19       Impact factor: 7.561

Review 6.  Blood platelet research in autism spectrum disorders: In search of biomarkers.

Authors:  Manisha Padmakumar; Eveline Van Raes; Chris Van Geet; Kathleen Freson
Journal:  Res Pract Thromb Haemost       Date:  2019-07-16

Review 7.  Leveraging large genomic datasets to illuminate the pathobiology of autism spectrum disorders.

Authors:  Veronica B Searles Quick; Belinda Wang; Matthew W State
Journal:  Neuropsychopharmacology       Date:  2020-07-15       Impact factor: 8.294

  7 in total

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