Literature DB >> 29941230

Gene Regulatory Network Perturbation by Genetic and Epigenetic Variation.

Yongsheng Li1, Daniel J McGrail2, Juan Xu3, Gordon B Mills2, Nidhi Sahni4, Song Yi5.   

Abstract

Gene regulatory networks underlie biological function and cellular physiology. Alternative splicing (AS) is a fundamental step in gene regulatory networks and plays a key role in development and disease. In addition to the identification of aberrant AS events, an increasing number of studies are focusing on molecular determinants of AS, including genetic and epigenetic regulators. We review here recent efforts to identify various deregulated AS events as well as their molecular determinants that alter biological functions, and discuss clinical features of AS and their druggable potential.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  alternative splicing; computational and experimental methods; gene regulatory networks; genetic and epigenetic; molecular regulators

Mesh:

Year:  2018        PMID: 29941230      PMCID: PMC6215597          DOI: 10.1016/j.tibs.2018.05.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  145 in total

Review 1.  Emerging roles of BRCA1 alternative splicing.

Authors:  T I Orban; E Olah
Journal:  Mol Pathol       Date:  2003-08

Review 2.  Transcriptional interference--a crash course.

Authors:  Keith E Shearwin; Benjamin P Callen; J Barry Egan
Journal:  Trends Genet       Date:  2005-06       Impact factor: 11.639

3.  Detection and quantification of alternative splicing variants using RNA-seq.

Authors:  Douglas W Bryant; Henry D Priest; Todd C Mockler
Journal:  Methods Mol Biol       Date:  2012

Review 4.  Targeting long non-coding RNA to therapeutically upregulate gene expression.

Authors:  Claes Wahlestedt
Journal:  Nat Rev Drug Discov       Date:  2013-06       Impact factor: 84.694

5.  Convergence of Acquired Mutations and Alternative Splicing of CD19 Enables Resistance to CART-19 Immunotherapy.

Authors:  Elena Sotillo; David M Barrett; Kathryn L Black; Asen Bagashev; Derek Oldridge; Glendon Wu; Robyn Sussman; Claudia Lanauze; Marco Ruella; Matthew R Gazzara; Nicole M Martinez; Colleen T Harrington; Elaine Y Chung; Jessica Perazzelli; Ted J Hofmann; Shannon L Maude; Pichai Raman; Alejandro Barrera; Saar Gill; Simon F Lacey; Jan J Melenhorst; David Allman; Elad Jacoby; Terry Fry; Crystal Mackall; Yoseph Barash; Kristen W Lynch; John M Maris; Stephan A Grupp; Andrei Thomas-Tikhonenko
Journal:  Cancer Discov       Date:  2015-10-29       Impact factor: 39.397

6.  RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation.

Authors:  Elias G Bechara; Endre Sebestyén; Isabella Bernardis; Eduardo Eyras; Juan Valcárcel
Journal:  Mol Cell       Date:  2013-12-12       Impact factor: 17.970

7.  Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin.

Authors:  Katherine A Hoadley; Christina Yau; Denise M Wolf; Andrew D Cherniack; David Tamborero; Sam Ng; Max D M Leiserson; Beifang Niu; Michael D McLellan; Vladislav Uzunangelov; Jiashan Zhang; Cyriac Kandoth; Rehan Akbani; Hui Shen; Larsson Omberg; Andy Chu; Adam A Margolin; Laura J Van't Veer; Nuria Lopez-Bigas; Peter W Laird; Benjamin J Raphael; Li Ding; A Gordon Robertson; Lauren A Byers; Gordon B Mills; John N Weinstein; Carter Van Waes; Zhong Chen; Eric A Collisson; Christopher C Benz; Charles M Perou; Joshua M Stuart
Journal:  Cell       Date:  2014-08-07       Impact factor: 41.582

8.  Protection from Fas-mediated apoptosis by a soluble form of the Fas molecule.

Authors:  J Cheng; T Zhou; C Liu; J P Shapiro; M J Brauer; M C Kiefer; P J Barr; J D Mountz
Journal:  Science       Date:  1994-03-25       Impact factor: 47.728

9.  A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis.

Authors:  Chunjiang He; Fang Zhou; Zhixiang Zuo; Hanhua Cheng; Rongjia Zhou
Journal:  PLoS One       Date:  2009-03-06       Impact factor: 3.240

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

View more
  3 in total

1.  e-MutPath: computational modeling reveals the functional landscape of genetic mutations rewiring interactome networks.

Authors:  Yongsheng Li; Brandon Burgman; Ishaani S Khatri; Sairahul R Pentaparthi; Zhe Su; Daniel J McGrail; Yang Li; Erxi Wu; S Gail Eckhardt; Nidhi Sahni; S Stephen Yi
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

2.  CpG Site-Specific Methylation-Modulated Divergent Expression of PRSS3 Transcript Variants Facilitates Nongenetic Intratumor Heterogeneity in Human Hepatocellular Carcinoma.

Authors:  Shuye Lin; Hanli Xu; Mengdi Pang; Xiaomeng Zhou; Yuanming Pan; Lishu Zhang; Xin Guan; Xiaoyue Wang; Bonan Lin; Rongmeng Tian; Keqiang Chen; Xiaochen Zhang; Zijiang Yang; Fengmin Ji; Yingying Huang; Wu Wei; Wanghua Gong; Jianke Ren; Ji Ming Wang; Mingzhou Guo; Jiaqiang Huang
Journal:  Front Oncol       Date:  2022-04-11       Impact factor: 5.738

3.  Integrated Analysis of the Functions and Prognostic Values of RNA Binding Proteins in Lung Squamous Cell Carcinoma.

Authors:  Wei Li; Xue Li; Li-Na Gao; Chong-Ge You
Journal:  Front Genet       Date:  2020-03-05       Impact factor: 4.599

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.