| Literature DB >> 29937070 |
Jinhong Zhu1, Wei Jia2, Caixia Wu3, Wen Fu2, Huimin Xia2, Guochang Liu4, Jing He5.
Abstract
Base excision repair (BER) is the main mechanism to repair endogenous DNA lesions caused by reactive oxygen species. BER deficiency is linked with cancer susceptibility and premature aging. Single nucleotide polymorphisms (SNPs) within BER genes have been implicated in various human malignancies. Nevertheless, a comprehensive investigation of their association with Wilms tumor susceptibility is lacking. In this study, 145 cases and 531 sex and age-matched healthy controls were recruited. We systematically genotyped 18 potentially functional SNPs in six core BER pathway genes, using a candidate SNP approach. Logistic regression was employed to evaluate odds ratio (OR) and 95% confidence interval (CI) adjusted for age and gender. Several SNPs showed protective effects against Wilms tumor. Significant associations with Wilms tumor susceptibility were shown for hOGG1 rs1052133 (dominant: adjusted OR = 0.66, 95% CI = 0.45-0.96, P = .030), FEN1 rs174538 (dominant: adjusted OR = 0.66, 95% CI = 0.45-0.95, P = .027; recessive: adjusted OR = 0.54, 95% CI = 0.32-0.93 P = .027), and FEN1 rs4246215 (dominant: adjusted OR = 0.55, 95% CI = 0.38-0.80, P = .002) polymorphisms. Stratified analysis was performed by age, gender, and clinical stage. Moreover, there was evidence of functional implication of these significant SNPs suggested by online expression quantitative trait locus (eQTL) analysis. Our findings indicate that common SNPs in BER genes modify susceptibility to Wilms tumor.Entities:
Keywords: Base excision repair; DNA repair; Polymorphisms; Susceptibility; Wilms tumor
Mesh:
Substances:
Year: 2018 PMID: 29937070 PMCID: PMC6085508 DOI: 10.1016/j.ebiom.2018.06.018
Source DB: PubMed Journal: EBioMedicine ISSN: 2352-3964 Impact factor: 8.143
Association of polymorphisms in base excision repair pathway genes with Wilms tumor susceptibility.
| Gene | SNP | Allele | Case ( | Control ( | Adjusted OR | Adjusted OR | HWE | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A | B | AA | AB | BB | AA | AB | BB | (95% CI) | (95% CI) | |||||
| rs1136410 | A | G | 39 | 72 | 32 | 171 | 260 | 100 | 1.26 (0.84–1.90) | 0.268 | 1.22 (0.78–1.91) | 0.394 | 0.947 | |
| rs2666428 | T | C | 89 | 50 | 4 | 347 | 168 | 16 | 1.15 (0.78–1.68) | 0.489 | 0.92 (0.30–2.81) | 0.885 | 0.421 | |
| rs8679 | A | G | 121 | 21 | 1 | 465 | 66 | 0 | 1.31 (0.78–2.22) | 0.310 | / | / | 0.127 | |
| rs1052133 | G | C | 57 | 66 | 21 | 159 | 281 | 91 | 0.82 (0.49–1.37) | 0.451 | 0.080 | |||
| rs159153 | T | C | 120 | 23 | 1 | 423 | 105 | 3 | 0.77 (0.47–1.25) | 0.288 | 1.25 (0.13–12.21) | 0.848 | 0.194 | |
| rs293795 | A | G | 131 | 13 | 0 | 465 | 65 | 1 | 0.69 (0.37–1.28) | 0.238 | / | / | 0.414 | |
| rs174538 | A | G | 64 | 63 | 18 | 181 | 239 | 111 | 0.053 | |||||
| rs4246215 | T | G | 71 | 51 | 23 | 182 | 239 | 110 | 0.73 (0.45–1.20) | 0.212 | 0.056 | |||
| rs1130409 | T | G | 68 | 62 | 15 | 210 | 227 | 94 | 0.75 (0.52–1.08) | 0.124 | 0.019 | |||
| rs1760944 | T | G | 57 | 69 | 19 | 186 | 245 | 100 | 0.84 (0.58–1.23) | 0.366 | 0.65 (0.38–1.10) | 0.108 | 0.228 | |
| rs3136817 | T | C | 125 | 19 | 1 | 443 | 85 | 3 | 0.81 (0.48–1.37) | 0.435 | 1.23 (0.13–11.95) | 0.857 | 0.619 | |
| rs1052536 | C | T | 65 | 63 | 17 | 247 | 237 | 47 | 1.06 (0.73–1.53) | 0.774 | 1.34 (0.74–2.41) | 0.336 | 0.354 | |
| rs3744356 | C | T | 140 | 5 | 0 | 519 | 12 | 0 | 1.61 (0.55–4.66) | 0.383 | / | / | 0.792 | |
| rs4796030 | A | C | 35 | 76 | 34 | 159 | 267 | 105 | 1.30 (0.85–2.00) | 0.221 | 1.23 (0.79–1.91) | 0.363 | 0.710 | |
| rs1799782 | G | A | 72 | 57 | 16 | 271 | 216 | 44 | 1.05 (0.73–1.52) | 0.784 | 1.34 (0.73–2.45) | 0.347 | 0.917 | |
| rs25487 | C | T | 82 | 53 | 10 | 309 | 181 | 41 | 1.08 (0.74–1.56) | 0.699 | 0.85 (0.41–1.75) | 0.657 | 0.049 | |
| rs25489 | C | T | 112 | 31 | 2 | 411 | 115 | 5 | 1.00 (0.65–1.56) | 0.985 | 1.42 (0.27–7.44) | 0.676 | 0.325 | |
| rs915927 | T | C | 107 | 38 | 0 | 397 | 121 | 13 | 1.06 (0.70–1.61) | 0.788 | / | / | 0.304 | |
OR, odds ratio; CI, confidence interval. HWE, Hardy-Weinberg equilibrium.
The results were in bold, if the 95% CI excluded 1 or P values <.05.
Adjusted for age and gender for dominant model.
Adjusted for age and gender for recessive model.
Stratification analysis of base excision repair pathway gene variant genotypes with Wilms tumor risk.
| Variables | AOR (95% CI) | AOR (95% CI) | AOR (95% CI) | AOR (95% CI) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs1052133 | rs174538 | rs4246215 | rs1130409 | |||||||||||||
| GG | GC/CC | AA | AG/GG | TT | TG/GG | TT/TG | GG | |||||||||
| Age, month | ||||||||||||||||
| ≤18 | 27/74 | 39/159 | 0.67 (0.38–1.17) | 0.156 | 29/81 | 37/152 | 0.67 (0.38–1.17) | 0.157 | 35/83 | 31/150 | 62/193 | 4/40 | ||||
| >18 | 30/85 | 48/213 | 0.63 (0.38–1.07) | 0.085 | 35/100 | 44/198 | 0.64 (0.38–1.05) | 0.079 | 36/99 | 43/199 | 68/244 | 11/54 | 0.74 (0.37–1.50) | 0.405 | ||
| Gender | ||||||||||||||||
| Females | 25/70 | 39/163 | 0.68 (0.38–1.21) | 0.185 | 30/83 | 34/150 | 0.63 (0.36–1.10) | 0.104 | 34/85 | 30/148 | 57/195 | 7/38 | 0.63 (0.27–1.48) | 0.286 | ||
| Males | 32/89 | 48/209 | 0.63 (0.38–1.05) | 0.076 | 34/98 | 47/200 | 0.68 (0.41–1.12) | 0.131 | 37/97 | 44/201 | 73/242 | 8/56 | 0.50 (0.23–1.09) | 0.083 | ||
| Clinical stages | ||||||||||||||||
| I/II | 24/159 | 29/372 | 25/181 | 28/350 | 0.60 (0.34–1.07) | 0.084 | 27/182 | 26/349 | 48/437 | 5/94 | 0.50 (0.19–1.30) | 0.156 | ||||
| III/IV | 27/159 | 55/372 | 0.87 (0.53–1.43) | 0.585 | 35/181 | 48/350 | 0.71 (0.44–1.13) | 0.147 | 38/182 | 45/349 | 73/437 | 10/94 | 0.63 (0.32–1.27) | 0.199 | ||
CI, confidence interval; AOR, adjusted odds ratio.
The results were in bold, if the 95% CI excluded 1 or P values <.05.
Obtained in logistic regression models with adjustment for age and gender omitting the corresponding stratification factor.