| Literature DB >> 29934625 |
Chang-Wei Tan1, Dun-Liang Wang2, Jian Zhou2, Ying Du2, Ming Luo2, Yong-Jian Zhang2, Wen-Shan Guo3.
Abstract
Chlorophyll fluorescence parameter of Fv/Fm, as an important index for evaluating crop yields and biomass, is key to guide crop management. However, the shortage of good hyperspectral data can hinder the accurate assessment of wheat Fv/Fm. In this research, the relationships between wheat canopy Fv/Fm and in-situ hyperspectral vegetation indexes were explored to develop a strategy for accurate Fv/Fm assessment. Fv/Fm had the highest coefficients with normalized pigments chlorophyll ratio index (NPCI) and the medium terrestrial chlorophyll index (MTCI). Both NPCI and MTCI were increased with the increase in Fv/Fm. However, NPCI value ceased to increase as Fv/Fm reached 0.61. MTCI had a descending trend when Fv/Fm value was higher than 0.61. A piecewise Fv/Fm assessment model with NPCI and MTCI regression variables was established when Fv/Fm value was ≤0.61 and >0.61, respectively. The model increased the accuracy of assessment by up to 16% as compared with the Fv/Fm assessment model based on a single vegetation index. Our study indicated that it was feasible to apply NPCI and MTCI to assess wheat Fv/Fm and to establish a piecewise Fv/Fm assessment model that can overcome the limitations from vegetation index saturation under high Fv/Fm value.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29934625 PMCID: PMC6015031 DOI: 10.1038/s41598-018-27902-3
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Fv/Fm absorbed by for wheat canopies at different growth stages.
Linear correlation coefficients (r) between the Fv/Fm absorbed by wheat canopies and hyperspectral VIs. + and ++ indicate significant difference at 0.05 and 0.01 probability level, respectively.
| VIs |
| VIs |
| VIs |
|
|---|---|---|---|---|---|
| SR[787, 765] | −0.417+ | mSRI2 | 0.814++ | MSAVI | 0.186 |
| SR[415, 710] | 0.827++ | NDI | 0.866++ | OSAVI | 0.139 |
| SR[415, 695] | 0.675++ | mNDI | 0.707++ | VARI | 0.406+ |
| SR[750, 705] | 0.686++ | PSRI | 0.813++ | TCARI | 0.654++ |
| SR[900, 680] | 0.594++ | RDVI | 0.775++ | WDRVI(a = 0.05) | 0.758++ |
| SR[801, 670] | 0.713++ | SRPI | 0.336+ | WDRVI(a = 0.1) | 0.729++ |
| SR[672,550, 708] | 0.697++ | RVI | −0.797++ | WDRVI(a = 0.2) | 0.767++ |
| VIopt1 | 0.815++ | NPCI | 0.891++ | RGR | 0.639++ |
| VIopt2 | 0.839++ | NPQI | −0.813++ | NDVI[760, 708] | 0.872++ |
| PSSR[800, 680] | 0.679++ | SIPI | 0.801++ | NDVI[800, 600] | 0.868++ |
| PSSR[800, 635] | 0.805++ | MTCI | 0.886++ | NDVI[780, 550] | 0.817++ |
| PSSR[800, 470] | 0.792++ | MCARI | 0.851++ | NDVI[800, 700] | 0.865++ |
| ZTM | 0.591++ | GNDVI | 0.809++ | NDIV[900, 680] | 0.879++ |
| R-M | 0.496++ | MTVI | 0.713++ | TCI/OSAVI | 0.052 |
| DI | −0.758++ | PRI | 0.602++ | MTVI/MSAVI | 0.133 |
| DVI | 0.724++ | TVI | 0.519++ | DDI/MSAVI | −0.108 |
| PSND[800, 635] | 0.768++ | TCI | 0.485++ | MCARI/OSAVI | 0.027 |
| PSND[800, 470] | 0.765++ | DDI | 0.372+ | TCARI/OSAVI | 0.119 |
| mSRI1 | 0.737++ | N* | 0.416++ |
Quantitative relationships between the Fv/Fm absorbed (y) by wheat canopies and hyperspectral VIs (x).
| VIs | Model |
| RRMSE |
|---|---|---|---|
| SR[415, 710] | y = 0.1037e3.0714x | 0.719++ | 0.184 |
| VIopt2 | y = 0.2164e0.9382x | 0.734++ | 0.176 |
| MTCI | y = 1.2577e1.9453x | 0.859++ | 0.116 |
| NDI | y = 0.2361e2.7634x | 0.773++ | 0.148 |
| NPCI | y = 0.1843e1.5271x | 0.874++ | 0.109 |
| MCARI | y = 1.2543e2.1641x | 0.745++ | 0.169 |
| NDVI[760, 708] | y = 0.4925e2.0015x | 0.809++ | 0.135 |
| NDVI[800, 600] | y = 0.9325e1.8542x | 0.781++ | 0.142 |
| NDVI[800, 700] | y = 1.7162e1.1539x | 0.769++ | 0.151 |
| NDIV[900, 680] | y = 2.0192e1.1934x | 0.834++ | 0.126 |
++ indicates significant difference at the 0.01 probability level.
Figure 2Changes of NPCI, MTCI and NDVI [900, 680] with the Fv/Fm for wheat canopy (n = 76).
Figure 3Hyperspectral VIs-based assessment models of Fv/Fm absorbed by wheat canopies. Shown here are the (A) NPCI- Fv/Fm model (F/F ≤ 0.61) and (B) MTCI- Fv/Fm model (F/F > 0.61). ++ indicates significant difference at 0.01 probability level.
Figure 4Evaluation of the assessment capability of the piecewise model for the Fv/Fm in wheat canopy. ++ indicates significant difference at 0.01 probability level. The solid and dashed lines represent the actual and 1:1 relation between estimated and measured value of Fv/Fm, respectively.
Definition of hyperspectral VIs evaluated in the study[30].
| VIs | Abbreviation | Algorithm |
|---|---|---|
| Simple ratio 1 | SR[787, 765] | R787/R765 |
| Simple ratio 2 | SR[415, 710] | R415/R710 |
| Simple ratio 3 | SR[415, 695] | R415/R695 |
| Simple ratio 4 | SR[750, 705] | R750/R705 |
| Simple ratio 5 | SR[900, 680] | R900/R680 |
| Simple ratio 6 | SR[801, 670] | R801/R670 |
| Simple ratio 7 | SR[672, 550, 708] | R672/(R550 * R708) |
| Optimized vegetation index 1 | VIopt1 | R760/R730 |
| Optimized vegetation index 2 | VIopt2 | 100 * (lnR760 − lnR730) |
| Pigment specific simple ratio 1 | PSSR[800, 680] | R800/R680 |
| Pigment specific simple ratio 2 | PSSR[800, 635] | R800/R635 |
| Pigment specific simple ratio 3 | PSSR[800, 470] | R800/R470 |
| Zarco-Tejada & Miller | ZTM | R750/R710 |
| Red-edge model index | R-M | (R750/R720) − 1 |
| Difference index | DI | R800 − R550 |
| Difference vegetation index | DVI | R800 − R680 |
| Pigment specific normalized difference 1 | PSND[800, 635] | (R800 − R635)/(R800 + R635) |
| Pigment specific normalized difference 2 | PSND[800, 470] | (R800 − R470)/(R800 + R470) |
| Modified simple ratio index 1 | mSRI1 | (R750 − R445)/(R705 + R445) |
| Modified simple ratio 2 | mSRI2 | (R800/R670 − 1)/SQRT(R800/R670 + 1) |
| Normalized difference index | NDI | (R800 − R680)/(R800 + R680) |
| Modified normalized difference index | mNDI | (R750 − R705)/(R750 + R705 − 2 * R445) |
| Plant senescence reflectance index | PSRI | (R680 − R500)/R750 |
| Re-normalized difference vegetation index | RDVI | (R800 − R670)/SQRT(R800 + R670) |
| Simple ratio pigment index | SRPI | R430/R680 |
| Ratio vegetation index | RVI | (R790:R810)/(R640:R660) |
| Normalized pigments chlorophyll ratio index | NPCI | (R680 − R430)/(R680 + R430) |
| Normalized phaeophytin ization index | NPQI | (R415 − R435)/(R415 + R435) |
| Structure intensive pigment index | SIPI | (R800 − R445)/(R800 − R680) |
| Medium terrestrial chlorophyll index | MTCI | (R750 − R710)/(R710 − R680) |
| Modified chlorophyll absorption in reflectance index | MCARI | [(R700 − R670) − 0.2 * (R700 − R550)] * (R700/R670) |
| Green normalized difference vegetation index | GNDVI | (R800 − R550)/(R800 + R550) |
| Modified transformed vegetation index | MTVI | 1.2 * [1.2 * (R800 − R550) − 2.5 * (R670 − R550)] |
| Photochemical reflectance index | PRI | (R531 − R570)/(R530 + R570) |
| Transformed vegetation index | TVI | 0.5 * [120 * (R750 − R550) − 200 * (R670 − R550)] |
| Temperature condition index | TCI | 1.2 * (R700 − R550) − 1.5 * (R670 − R550) * SQRT(R700/R670) |
| Double difference index | DDI | (R750 − R720) − (R700 − R670) |
| Scaled normalized difference vegetation index | N* | (NDVI − NDVI0)/(NDVIS − NDVI0) |
| Modified soil adjusted vegetation index | MSAVI | 0.5 * [2 * R800 + 1 − SQRT((2 * R800 + 1)^2-8 * (R800 − R670))] |
| Optimal soil adjusted vegetation index | OSAVI | (1 + 0.16) * (R800 − R670)/(R800 + R670 + 0.16) |
| Transformed chlorophyll absorption in reflectance index | TCARI | 3 * [(R700 − R670) − 0.2 * (R700 − R550) * (R700/R670)] |
| Visible atmospherically resistant index | VARI | (R555 − R680)/(R555 + R680 − R480) |
| Wide dynamic range vegetation index | WDRVI | (α*Rnir − Rred)/(α * Rnir + Rred), a = 0.05, 0.1, 0.2 |
| Red green ratio | RGR | (R612 + R660)/(R510 + R560) |
| Normalized difference vegetation index 1 | NDVI[760, 708] | (R760 − R708)/(R760 + R708) |
| Normalized difference vegetation index 2 | NDVI[800, 600] | (R800 − R600)/(R800 + R600) |
| Normalized difference vegetation index 3 | NDVI[780, 550] | (R780 − R550)/(R780 + R550) |
| Normalized difference vegetation index 4 | NDVI[800, 700] | (R800 − R700)/(R800 + R700) |
| Normalized difference vegetation index5 | NDIV[900, 680] | (R900 − R680)/(R900 + R680) |
| Ratio between TCI and OSAVI | TCI/OSAVI | TCI/OSAVI |
| Ratio between MTVI and MSAVI | MTVI/MSAVI | MTVI/MSAVI |
| Ratio between DDI and MSAVI | DDI/MSAVI | DDI/MSAVI |
| Ratio between MCARI and OSAVI | MCARI/OSAVI | MCARI/OSAVI |
| Ratio between TCARI and OSAVI | TCARI/OSAVI | TCARI/OSAVI |