Literature DB >> 29934402

Reply to Huang et al.: Avoiding "one-size-fits-all" approaches to variant discovery.

Michael A Hardigan1, F Parker E Laimbeer2, John P Hamilton1, Brieanne Vaillancourt1, David S Douches3, Eva M Farré1, Richard E Veilleux2, C Robin Buell4.   

Abstract

Year:  2018        PMID： 29934402      PMCID： PMC6048505          DOI： 10.1073/pnas.1807622115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  10 in total

1.  Genomic plasticity and the diversity of polyploid plants.

Authors:  A R Leitch; I J Leitch
Journal:  Science       Date:  2008-04-25       Impact factor: 47.728

2.  Genome diversity of the potato.

Authors:  Binquan Huang; David M Spooner; Qiqi Liang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-22       Impact factor: 11.205

3.  Genomic analyses provide insights into the history of tomato breeding.

Authors:  Tao Lin; Guangtao Zhu; Junhong Zhang; Xiangyang Xu; Qinghui Yu; Zheng Zheng; Zhonghua Zhang; Yaoyao Lun; Shuai Li; Xiaoxuan Wang; Zejun Huang; Junming Li; Chunzhi Zhang; Taotao Wang; Yuyang Zhang; Aoxue Wang; Yancong Zhang; Kui Lin; Chuanyou Li; Guosheng Xiong; Yongbiao Xue; Andrea Mazzucato; Mathilde Causse; Zhangjun Fei; James J Giovannoni; Roger T Chetelat; Dani Zamir; Thomas Städler; Jingfu Li; Zhibiao Ye; Yongchen Du; Sanwen Huang
Journal:  Nat Genet       Date:  2014-10-12       Impact factor: 38.330

4.  Impacts of genetic bottlenecks on soybean genome diversity.

Authors:  David L Hyten; Qijian Song; Youlin Zhu; Ik-Young Choi; Randall L Nelson; Jose M Costa; James E Specht; Randy C Shoemaker; Perry B Cregan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-26       Impact factor: 11.205

5.  From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.

Authors:  Geraldine A Van der Auwera; Mauricio O Carneiro; Christopher Hartl; Ryan Poplin; Guillermo Del Angel; Ami Levy-Moonshine; Tadeusz Jordan; Khalid Shakir; David Roazen; Joel Thibault; Eric Banks; Kiran V Garimella; David Altshuler; Stacey Gabriel; Mark A DePristo
Journal:  Curr Protoc Bioinformatics       Date:  2013

Review 6.  Corn and humans: recombination and linkage disequilibrium in two genomes of similar size.

Authors:  Antoni Rafalski; Michele Morgante
Journal:  Trends Genet       Date:  2004-02       Impact factor: 11.639

7.  Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato.

Authors:  Michael A Hardigan; F Parker E Laimbeer; Linsey Newton; Emily Crisovan; John P Hamilton; Brieanne Vaillancourt; Krystle Wiegert-Rininger; Joshua C Wood; David S Douches; Eva M Farré; Richard E Veilleux; C Robin Buell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-30       Impact factor: 11.205

8.  Evaluating Variant Calling Tools for Non-Matched Next-Generation Sequencing Data.

Authors:  Sarah Sandmann; Aniek O de Graaf; Mohsen Karimi; Bert A van der Reijden; Eva Hellström-Lindberg; Joop H Jansen; Martin Dugas
Journal:  Sci Rep       Date:  2017-02-24       Impact factor: 4.379

Review 9.  Domestication and breeding of tomatoes: what have we gained and what can we gain in the future?

Authors:  Yuling Bai; Pim Lindhout
Journal:  Ann Bot       Date:  2007-08-23       Impact factor: 4.357

10.  Systematic comparison of variant calling pipelines using gold standard personal exome variants.

Authors:  Sohyun Hwang; Eiru Kim; Insuk Lee; Edward M Marcotte
Journal:  Sci Rep       Date:  2015-12-07       Impact factor: 4.379
  10 in total

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