Literature DB >> 29923068

Reconstruction of Y-chromosome phylogeny reveals two neolithic expansions of Tibeto-Burman populations.

Ling-Xiang Wang1,2, Yan Lu3, Chao Zhang3,4, Lan-Hai Wei1,5,2, Shi Yan1, Yun-Zhi Huang1,2, Chuan-Chao Wang6, Swapan Mallick7, Shao-Qing Wen1,2, Li Jin1,2, Shu-Hua Xu8,9,10,11,12, Hui Li13,14.   

Abstract

Diffusion of Tibeto-Burman populations across the Tibetan Plateau led to the largest human community in a high-altitude environment and has long been a focus of research on high-altitude adaptation, archeology, genetics, and linguistics. However, much uncertainty remains regarding the origin, diversification, and expansion of Tibeto-Burman populations. In this study, we analyzed a 7.0M bp region of 285 Y-chromosome sequences, including 81 newly reported ones, from male samples from Tibeto-Burman populations and other related Eastern Asian populations. We identified several paternal lineages specific to Tibeto-Burman populations, and most of these lineages emerged between 6000 and 2500 years ago. A phylogenetic tree and lineage dating both support the hypothesis that the establishment of Tibeto-Burman ancestral groups was triggered by Neolithic expansions from the middle Yellow River Basin and admixtures with local populations on the Tibetan Plateau who survived the Paleolithic Age. Furthermore, according to the geographical distributions of the haplogroups, we propose that there are two Neolithic expansion origins for all modern Tibeto-Burman populations. Our research provides a clear scenario about the sources, admixture process and later diffusion process of the ancestor population of all Tibeto-Burman populations.

Entities:  

Keywords:  Founder lineage; Tibetan Plateau; Tibeto-Burman; Y-chromosome

Mesh:

Year:  2018        PMID: 29923068     DOI: 10.1007/s00438-018-1461-2

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  16 in total

1.  Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122.

Authors:  Hong Shi; Yong-Li Dong; Bo Wen; Chun-Jie Xiao; Peter A Underhill; Pei-Dong Shen; Ranajit Chakraborty; Li Jin; Bing Su
Journal:  Am J Hum Genet       Date:  2005-07-14       Impact factor: 11.025

2.  Retrieving Y chromosomal haplogroup trees using GWAS data.

Authors:  Min-Sheng Peng; Jun-Dong He; Long Fan; Jie Liu; Adeniyi C Adeola; Shi-Fang Wu; Robert W Murphy; Yong-Gang Yao; Ya-Ping Zhang
Journal:  Eur J Hum Genet       Date:  2013-11-27       Impact factor: 4.246

3.  Ancestral Origins and Genetic History of Tibetan Highlanders.

Authors:  Dongsheng Lu; Haiyi Lou; Kai Yuan; Xiaoji Wang; Yuchen Wang; Chao Zhang; Yan Lu; Xiong Yang; Lian Deng; Ying Zhou; Qidi Feng; Ya Hu; Qiliang Ding; Yajun Yang; Shilin Li; Li Jin; Yaqun Guan; Bing Su; Longli Kang; Shuhua Xu
Journal:  Am J Hum Genet       Date:  2016-08-25       Impact factor: 11.025

4.  Genetic evidence of paleolithic colonization and neolithic expansion of modern humans on the tibetan plateau.

Authors:  Xuebin Qi; Chaoying Cui; Yi Peng; Xiaoming Zhang; Zhaohui Yang; Hua Zhong; Hui Zhang; Kun Xiang; Xiangyu Cao; Yi Wang; Tianyi Wu; Hua Chen; Hong Shi; Bing Su
Journal:  Mol Biol Evol       Date:  2013-05-16       Impact factor: 16.240

5.  The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades.

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Journal:  Mol Biol Evol       Date:  2014-12-02       Impact factor: 16.240

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Journal:  Genome Res       Date:  2015-03-13       Impact factor: 9.043

7.  Differentiated demographic histories and local adaptations between Sherpas and Tibetans.

Authors:  Chao Zhang; Yan Lu; Qidi Feng; Xiaoji Wang; Haiyi Lou; Jiaojiao Liu; Zhilin Ning; Kai Yuan; Yuchen Wang; Ying Zhou; Lian Deng; Lijun Liu; Yajun Yang; Shilin Li; Lifeng Ma; Zhiying Zhang; Li Jin; Bing Su; Longli Kang; Shuhua Xu
Journal:  Genome Biol       Date:  2017-06-15       Impact factor: 13.583

8.  The confounding effect of population structure on Bayesian skyline plot inferences of demographic history.

Authors:  Rasmus Heller; Lounes Chikhi; Hans Redlef Siegismund
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

9.  Genetic structure of Qiangic populations residing in the western Sichuan corridor.

Authors:  Chuan-Chao Wang; Ling-Xiang Wang; Rukesh Shrestha; Manfei Zhang; Xiu-Yuan Huang; Kang Hu; Li Jin; Hui Li
Journal:  PLoS One       Date:  2014-08-04       Impact factor: 3.240

10.  The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Authors:  Swapan Mallick; Heng Li; Mark Lipson; Iain Mathieson; Melissa Gymrek; Fernando Racimo; Mengyao Zhao; Niru Chennagiri; Susanne Nordenfelt; Arti Tandon; Pontus Skoglund; Iosif Lazaridis; Sriram Sankararaman; Qiaomei Fu; Nadin Rohland; Gabriel Renaud; Yaniv Erlich; Thomas Willems; Carla Gallo; Jeffrey P Spence; Yun S Song; Giovanni Poletti; Francois Balloux; George van Driem; Peter de Knijff; Irene Gallego Romero; Aashish R Jha; Doron M Behar; Claudio M Bravi; Cristian Capelli; Tor Hervig; Andres Moreno-Estrada; Olga L Posukh; Elena Balanovska; Oleg Balanovsky; Sena Karachanak-Yankova; Hovhannes Sahakyan; Draga Toncheva; Levon Yepiskoposyan; Chris Tyler-Smith; Yali Xue; M Syafiq Abdullah; Andres Ruiz-Linares; Cynthia M Beall; Anna Di Rienzo; Choongwon Jeong; Elena B Starikovskaya; Ene Metspalu; Jüri Parik; Richard Villems; Brenna M Henn; Ugur Hodoglugil; Robert Mahley; Antti Sajantila; George Stamatoyannopoulos; Joseph T S Wee; Rita Khusainova; Elza Khusnutdinova; Sergey Litvinov; George Ayodo; David Comas; Michael F Hammer; Toomas Kivisild; William Klitz; Cheryl A Winkler; Damian Labuda; Michael Bamshad; Lynn B Jorde; Sarah A Tishkoff; W Scott Watkins; Mait Metspalu; Stanislav Dryomov; Rem Sukernik; Lalji Singh; Kumarasamy Thangaraj; Svante Pääbo; Janet Kelso; Nick Patterson; David Reich
Journal:  Nature       Date:  2016-09-21       Impact factor: 49.962

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Journal:  J Hum Genet       Date:  2019-05-31       Impact factor: 3.172

2.  Ancient DNA from Tubo Kingdom-related tombs in northeastern Tibetan Plateau revealed their genetic affinity to both Tibeto-Burman and Altaic populations.

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3.  Genetic structure and forensic characteristics of Tibeto-Burman-speaking Ü-Tsang and Kham Tibetan Highlanders revealed by 27 Y-chromosomal STRs.

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-06       Impact factor: 11.205

5.  Combined Low-/High-Density Modern and Ancient Genome-Wide Data Document Genomic Admixture History of High-Altitude East Asians.

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6.  Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors.

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8.  Genetic diversity and phylogenetic structure of four Tibeto-Burman-speaking populations in Tibetan-Yi corridor revealed by insertion/deletion polymorphisms.

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Journal:  Sci Rep       Date:  2020-11-27       Impact factor: 4.996

  10 in total

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