Literature DB >> 29916015

Mechanism of Splicing Regulation of Spinal Muscular Atrophy Genes.

Ravindra N Singh1, Natalia N Singh2.   

Abstract

Spinal muscular atrophy (SMA) is one of the major genetic disorders associated with infant mortality. More than 90% cases of SMA result from deletions or mutations of Survival Motor Neuron 1 (SMN1) gene. SMN2, a nearly identical copy of SMN1, does not compensate for the loss of SMN1 due to predominant skipping of exon 7. However, correction of SMN2 exon 7 splicing has proven to confer therapeutic benefits in SMA patients. The only approved drug for SMA is an antisense oligonucleotide (Spinraza™/Nusinersen), which corrects SMN2 exon 7 splicing by blocking intronic splicing silencer N1 (ISS-N1) located immediately downstream of exon 7. ISS-N1 is a complex regulatory element encompassing overlapping negative motifs and sequestering a cryptic splice site. More than 40 protein factors have been implicated in the regulation of SMN exon 7 splicing. There is evidence to support that multiple exons of SMN are alternatively spliced during oxidative stress, which is associated with a growing number of pathological conditions. Here, we provide the most up to date account of the mechanism of splicing regulation of the SMN genes.

Entities:  

Keywords:  Cryptic splice site; ISS-N1; ISS-N2; SMA; SMN; Splicing; U1 snRNA

Mesh:

Substances:

Year:  2018        PMID: 29916015      PMCID: PMC6026014          DOI: 10.1007/978-3-319-89689-2_2

Source DB:  PubMed          Journal:  Adv Neurobiol


  128 in total

1.  Alu-containing exons are alternatively spliced.

Authors:  Rotem Sorek; Gil Ast; Dan Graur
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

2.  Splicing regulation in spinal muscular atrophy by an RNA structure formed by long-distance interactions.

Authors:  Natalia N Singh; Brian M Lee; Ravindra N Singh
Journal:  Ann N Y Acad Sci       Date:  2015-02-27       Impact factor: 5.691

3.  SMN2 exon 7 splicing is inhibited by binding of hnRNP A1 to a common ESS motif that spans the 3' splice site.

Authors:  Thomas Koed Doktor; Lisbeth Dahl Schroeder; Anne Vested; Johan Palmfeldt; Henriette Skovgaard Andersen; Niels Gregersen; Brage Storstein Andresen
Journal:  Hum Mutat       Date:  2011-01-25       Impact factor: 4.878

4.  The splicing regulator Sam68 binds to a novel exonic splicing silencer and functions in SMN2 alternative splicing in spinal muscular atrophy.

Authors:  Simona Pedrotti; Pamela Bielli; Maria Paola Paronetto; Fabiola Ciccosanti; Gian Maria Fimia; Stefan Stamm; James L Manley; Claudio Sette
Journal:  EMBO J       Date:  2010-02-25       Impact factor: 11.598

5.  Identification of a cis-acting element for the regulation of SMN exon 7 splicing.

Authors:  Hiroshi Miyajima; Hidenobu Miyaso; Masayo Okumura; Junko Kurisu; Kazunori Imaizumi
Journal:  J Biol Chem       Date:  2002-04-15       Impact factor: 5.157

6.  Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA.

Authors:  Bettina Heinrich; Zhaiyi Zhang; Oleg Raitskin; Michael Hiller; Natalya Benderska; Annette M Hartmann; Laurent Bracco; David Elliott; Shani Ben-Ari; Hermona Soreq; Joseph Sperling; Ruth Sperling; Stefan Stamm
Journal:  J Biol Chem       Date:  2009-03-12       Impact factor: 5.157

7.  An extended inhibitory context causes skipping of exon 7 of SMN2 in spinal muscular atrophy.

Authors:  Natalia N Singh; Elliot J Androphy; Ravindra N Singh
Journal:  Biochem Biophys Res Commun       Date:  2004-03-05       Impact factor: 3.575

8.  hnRNP A1 functions with specificity in repression of SMN2 exon 7 splicing.

Authors:  Tsuyoshi Kashima; Nishta Rao; Charles J David; James L Manley
Journal:  Hum Mol Genet       Date:  2007-09-19       Impact factor: 6.150

9.  Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice.

Authors:  Yimin Hua; Timothy A Vickers; Hazeem L Okunola; C Frank Bennett; Adrian R Krainer
Journal:  Am J Hum Genet       Date:  2008-03-27       Impact factor: 11.025

10.  Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells.

Authors:  Manuel D Díaz-Muñoz; Vladimir Yu Kiselev; Nicolas Le Novère; Tomaz Curk; Jernej Ule; Martin Turner
Journal:  Nat Commun       Date:  2017-09-13       Impact factor: 14.919

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  36 in total

Review 1.  A novel role of U1 snRNP: Splice site selection from a distance.

Authors:  Ravindra N Singh; Natalia N Singh
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-04-28       Impact factor: 4.490

2.  Mechanisms of Neuronal Alternative Splicing and Strategies for Therapeutic Interventions.

Authors:  Eduardo Javier Lopez Soto; Michael J Gandal; Thomas Gonatopoulos-Pournatzis; Elizabeth A Heller; Diou Luo; Sika Zheng
Journal:  J Neurosci       Date:  2019-10-16       Impact factor: 6.167

Review 3.  A survey of transcripts generated by spinal muscular atrophy genes.

Authors:  Natalia N Singh; Eric W Ottesen; Ravindra N Singh
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-05-06       Impact factor: 4.490

Review 4.  How RNA structure dictates the usage of a critical exon of spinal muscular atrophy gene.

Authors:  Natalia N Singh; Ravindra N Singh
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-07-16       Impact factor: 4.490

Review 5.  More than a messenger: Alternative splicing as a therapeutic target.

Authors:  A J Black; J R Gamarra; J Giudice
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-07-02       Impact factor: 4.490

Review 6.  Restoring Protein Expression in Neuromuscular Conditions: A Review Assessing the Current State of Exon Skipping/Inclusion and Gene Therapies for Duchenne Muscular Dystrophy and Spinal Muscular Atrophy.

Authors:  Omar Sheikh; Toshifumi Yokota
Journal:  BioDrugs       Date:  2021-06-07       Impact factor: 5.807

Review 7.  Current Status of Antisense Oligonucleotide-Based Therapy in Neuromuscular Disorders.

Authors:  Flavien Bizot; Adeline Vulin; Aurélie Goyenvalle
Journal:  Drugs       Date:  2020-09       Impact factor: 9.546

Review 8.  RNA in spinal muscular atrophy: therapeutic implications of targeting.

Authors:  Ravindra N Singh; Joonbae Seo; Natalia N Singh
Journal:  Expert Opin Ther Targets       Date:  2020-06-25       Impact factor: 6.902

Review 9.  Spinal muscular atrophy: Broad disease spectrum and sex-specific phenotypes.

Authors:  Natalia N Singh; Shaine Hoffman; Prabhakara P Reddi; Ravindra N Singh
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2021-01-05       Impact factor: 5.187

10.  Comprehensive transcriptome-wide analysis of spliceopathy correction of myotonic dystrophy using CRISPR-Cas9 in iPSCs-derived cardiomyocytes.

Authors:  Sumitava Dastidar; Debanjana Majumdar; Jaitip Tipanee; Kshitiz Singh; Arnaud F Klein; Denis Furling; Marinee K Chuah; Thierry VandenDriessche
Journal:  Mol Ther       Date:  2021-08-08       Impact factor: 11.454

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