Literature DB >> 29915237

Genome editing by natural and engineered CRISPR-associated nucleases.

Wen Y Wu1, Joyce H G Lebbink2,3, Roland Kanaar2,4, Niels Geijsen5, John van der Oost6.   

Abstract

Over the last decade, research on distinct types of CRISPR systems has revealed many structural and functional variations. Recently, several novel types of single-polypeptide CRISPR-associated systems have been discovered including Cas12a/Cpf1 and Cas13a/C2c2. Despite distant similarities to Cas9, these additional systems have unique structural and functional features, providing new opportunities for genome editing applications. Here, relevant fundamental features of natural and engineered CRISPR-Cas variants are compared. Moreover, practical matters are discussed that are essential for dedicated genome editing applications, including nuclease regulation and delivery, target specificity, as well as host repair diversity.

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Year:  2018        PMID: 29915237     DOI: 10.1038/s41589-018-0080-x

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  35 in total

1.  Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a.

Authors:  Sjoerd C A Creutzburg; Wen Y Wu; Prarthana Mohanraju; Thomas Swartjes; Ferhat Alkan; Jan Gorodkin; Raymond H J Staals; John van der Oost
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

Review 2.  Genetic Engineering for Disease Resistance in Plants: Recent Progress and Future Perspectives.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Plant Physiol       Date:  2019-03-13       Impact factor: 8.340

3.  Second Messenger cA4 Formation within the Composite Csm1 Palm Pocket of Type III-A CRISPR-Cas Csm Complex and Its Release Path.

Authors:  Ning Jia; Roger Jones; George Sukenick; Dinshaw J Patel
Journal:  Mol Cell       Date:  2019-07-17       Impact factor: 17.970

4.  CRISPR-Cas III-A Csm6 CARF Domain Is a Ring Nuclease Triggering Stepwise cA4 Cleavage with ApA>p Formation Terminating RNase Activity.

Authors:  Ning Jia; Roger Jones; Guangli Yang; Ouathek Ouerfelli; Dinshaw J Patel
Journal:  Mol Cell       Date:  2019-07-17       Impact factor: 17.970

Review 5.  CRISPR Genome Editing Systems in the Genus Clostridium: a Timely Advancement.

Authors:  Kathleen N McAllister; Joseph A Sorg
Journal:  J Bacteriol       Date:  2019-07-24       Impact factor: 3.490

6.  Targeted DNA insertion in plants.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-30       Impact factor: 11.205

7.  The anti-cancer drug 5-fluorouracil affects cell cycle regulators and potential regulatory long non-coding RNAs in yeast.

Authors:  Bingning Xie; Emmanuelle Becker; Igor Stuparevic; Maxime Wery; Ugo Szachnowski; Antonin Morillon; Michael Primig
Journal:  RNA Biol       Date:  2019-03-20       Impact factor: 4.652

8.  Massively parallel kinetic profiling of natural and engineered CRISPR nucleases.

Authors:  Stephen K Jones; John A Hawkins; Nicole V Johnson; Cheulhee Jung; Kuang Hu; James R Rybarski; Janice S Chen; Jennifer A Doudna; William H Press; Ilya J Finkelstein
Journal:  Nat Biotechnol       Date:  2020-09-07       Impact factor: 54.908

9.  Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches.

Authors:  Majda Bratovič; Ines Fonfara; Krzysztof Chylinski; Eric J C Gálvez; Timothy J Sullivan; Stefan Boerno; Bernd Timmermann; Michael Boettcher; Emmanuelle Charpentier
Journal:  Nat Chem Biol       Date:  2020-03-02       Impact factor: 15.040

10.  Delivery of Tissue-Targeted Scalpels: Opportunities and Challenges for In Vivo CRISPR/Cas-Based Genome Editing.

Authors:  Tuo Wei; Qiang Cheng; Lukas Farbiak; Daniel G Anderson; Robert Langer; Daniel J Siegwart
Journal:  ACS Nano       Date:  2020-07-22       Impact factor: 15.881

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