Literature DB >> 29911205

Three Dimensions of Reproducibility in Natural Language Processing.

K Bretonnel Cohen1,2, Jingbo Xia3, Pierre Zweigenbaum2, Tiffany J Callahan1, Orin Hargraves4, Foster Goss5, Nancy Ide6, Aurélie Névéol2, Cyril Grouin2, Lawrence E Hunter1.   

Abstract

Despite considerable recent attention to problems with reproducibility of scientific research, there is a striking lack of agreement about the definition of the term. That is a problem, because the lack of a consensus definition makes it difficult to compare studies of reproducibility, and thus to have even a broad overview of the state of the issue in natural language processing. This paper proposes an ontology of reproducibility in that field. Its goal is to enhance both future research and communication about the topic, and retrospective meta-analyses. We show that three dimensions of reproducibility, corresponding to three kinds of claims in natural language processing papers, can account for a variety of types of research reports. These dimensions are reproducibility of a conclusion, of a finding, and of a value. Three biomedical natural language processing papers by the authors of this paper are analyzed with respect to these dimensions.

Entities:  

Keywords:  methodology; repeatability; replicability; replicatability; reproducibility

Year:  2018        PMID: 29911205      PMCID: PMC5998676     

Source DB:  PubMed          Journal:  LREC Int Conf Lang Resour Eval


  34 in total

1.  The fate of neuroradiologic abstracts presented at national meetings in 1993: rate of subsequent publication in peer-reviewed, indexed journals.

Authors:  W F Marx; H J Cloft; H M Do; D F Kallmes
Journal:  AJNR Am J Neuroradiol       Date:  1999 Jun-Jul       Impact factor: 3.825

2.  Full publication of abstracts of randomised controlled trials published at International Continence Society meetings'.

Authors:  Peter Herbison
Journal:  Neurourol Urodyn       Date:  2004       Impact factor: 2.696

3.  Factors influencing publication of abstracts presented at the AAO-HNS Annual Meeting.

Authors:  Phyllis H Peng; Jared M Wasserman; Richard M Rosenfeld
Journal:  Otolaryngol Head Neck Surg       Date:  2006-08       Impact factor: 3.497

4.  Fate of abstracts presented at the World Congress of Endourology: are they followed by publication in peer-reviewed journals?

Authors:  Riccardo Autorino; Giuseppe Quarto; Marco De Sio; Estevao Lima; Ernesto Quarto; Rocco Damiano; Rosario Oliviero; Luis Osorio; Filinto Marcelo; Massimo D'Armiento
Journal:  J Endourol       Date:  2006-12       Impact factor: 2.942

5.  Publication of surgical abstracts in full text: a retrospective cohort study.

Authors:  S P Balasubramanian; I D Kumar; L Wyld; M W Reed
Journal:  Ann R Coll Surg Engl       Date:  2006-01       Impact factor: 1.891

6.  Publication of abstracts presented at 2001 NAACT.

Authors:  Craig G Smollin; Lewis S Nelson
Journal:  J Med Toxicol       Date:  2006-09

7.  Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions.

Authors:  Wendy W Chapman; Prakash M Nadkarni; Lynette Hirschman; Leonard W D'Avolio; Guergana K Savova; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2011 Sep-Oct       Impact factor: 4.497

Review 8.  Community challenges in biomedical text mining over 10 years: success, failure and the future.

Authors:  Chung-Chi Huang; Zhiyong Lu
Journal:  Brief Bioinform       Date:  2015-05-01       Impact factor: 11.622

9.  Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles.

Authors:  K Bretonnel Cohen; Foster R Goss; Pierre Zweigenbaum; Lawrence E Hunter
Journal:  Stud Health Technol Inform       Date:  2017

10.  MIMIC II: a massive temporal ICU patient database to support research in intelligent patient monitoring.

Authors:  M Saeed; C Lieu; G Raber; R G Mark
Journal:  Comput Cardiol       Date:  2002
View more
  3 in total

1.  Data Extraction and Synthesis in Systematic Reviews of Diagnostic Test Accuracy: A Corpus for Automating and Evaluating the Process.

Authors:  Christopher Norman; Mariska Leeflang; Aurélie Névéol
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

2.  Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.

Authors:  William Digan; Aurélie Névéol; Antoine Neuraz; Maxime Wack; David Baudoin; Anita Burgun; Bastien Rance
Journal:  J Am Med Inform Assoc       Date:  2021-03-01       Impact factor: 4.497

3.  The role of machine learning in developing non-magnetic resonance imaging based biomarkers for multiple sclerosis: a systematic review.

Authors:  Md Zakir Hossain; Elena Daskalaki; Anne Brüstle; Jane Desborough; Christian J Lueck; Hanna Suominen
Journal:  BMC Med Inform Decis Mak       Date:  2022-09-15       Impact factor: 3.298

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.