Literature DB >> 29911147

In silico targeting of non-structural 4B protein from dengue virus 4 with spiropyrazolopyridone: study of molecular dynamics simulation, ADMET and virtual screening.

Waqar Hussain1, Iqra Qaddir2, Sajid Mahmood3, Nouman Rasool4,5.   

Abstract

Dengue fever is one of the most prevalent disease in tropical and sub-tropical regions of the world. According to the World Health Organisation (WHO), approximately 3.5 billion people have been affected with dengue fever. Four serotypes of dengue virus (DENV) i.e. DENV1, DENV2, DENV3 and DENV4 have up to 65% genetic variations among themselves. dengue virus 4 (DENV4) was first reported from Amazonas, Brazil and is spreading perilously due to lack of awareness of preventive measures, as it is the least targeted serotype. In this study, non-structural protein 4B of dengue virus 4 (DENV4-NS4B) is computationally characterised and simulations are performed including solvation, energy minimizations and neutralisation for the refinement of predicted model of the protein. The spiropyrazolopyridone is considered as an effective drug against NS4B of DENV2, therefore, a total of 91 different analogues of spiropyrazolopyridone are used to analyse their inhibitory action against DENV4-NS4B. These compounds are docked at the binding site with various binding affinities, representing their efficacy to block the binding pocket of the protein. Pharmacological and pharmacokinetic assessment performed on these inhibitors shows that these are suitable candidates to be used as a drug against the dengue fever. Among all these 91 compounds, Analogue-I and Analogue-II are analysed to be the most effective inhibitor having potential to be used as drugs against dengue virus.

Entities:  

Keywords:  ADMET; DENV4-NS4B; Dengue virus 4; Molecular dynamics simulation; Non-structural protein 4B; Spiropyrazolopyridone; Virtual screening

Year:  2018        PMID: 29911147      PMCID: PMC6003060          DOI: 10.1007/s13337-018-0446-4

Source DB:  PubMed          Journal:  Virusdisease        ISSN: 2347-3584


  35 in total

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2.  NS4A and NS4B proteins from dengue virus: membranotropic regions.

Authors:  Henrique Nemésio; Francis Palomares-Jerez; José Villalaín
Journal:  Biochim Biophys Acta       Date:  2012-07-05

3.  Characterization of dengue virus NS4A and NS4B protein interaction.

Authors:  Jing Zou; Xuping Xie; Qing-Yin Wang; Hongping Dong; Michelle Yueqi Lee; Congbao Kang; Zhiming Yuan; Pei-Yong Shi
Journal:  J Virol       Date:  2015-01-07       Impact factor: 5.103

4.  Critique of World Health Organization Recommendation of a Dengue Vaccine.

Authors:  Scott B Halstead
Journal:  J Infect Dis       Date:  2016-08-05       Impact factor: 5.226

5.  Discovery of novel dengue virus NS5 methyltransferase non-nucleoside inhibitors by fragment-based drug design.

Authors:  Fatiha Benmansour; Iuni Trist; Bruno Coutard; Etienne Decroly; Gilles Querat; Andrea Brancale; Karine Barral
Journal:  Eur J Med Chem       Date:  2016-10-05       Impact factor: 6.514

6.  AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.

Authors:  Garrett M Morris; Ruth Huey; William Lindstrom; Michel F Sanner; Richard K Belew; David S Goodsell; Arthur J Olson
Journal:  J Comput Chem       Date:  2009-12       Impact factor: 3.376

7.  Flexibility of NS5 Methyltransferase-Polymerase Linker Region Is Essential for Dengue Virus Replication.

Authors:  Yongqian Zhao; Tingjin Sherryl Soh; Kitti Wing Ki Chan; Sarah Suet Yin Fung; Kunchithapadam Swaminathan; Siew Pheng Lim; Pei-Yong Shi; Thomas Huber; Julien Lescar; Dahai Luo; Subhash G Vasudevan
Journal:  J Virol       Date:  2015-08-12       Impact factor: 5.103

8.  Inhibitor designing, virtual screening, and docking studies for methyltransferase: A potential target against dengue virus.

Authors:  Jagbir Singh; Mahesh Kumar; Rani Mansuri; Ganesh Chandra Sahoo; Aakash Deep
Journal:  J Pharm Bioallied Sci       Date:  2016 Jul-Sep

9.  KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns.

Authors:  Yung-Hao Wong; Tzong-Yi Lee; Han-Kuen Liang; Chia-Mao Huang; Ting-Yuan Wang; Yi-Huan Yang; Chia-Huei Chu; Hsien-Da Huang; Ming-Tat Ko; Jenn-Kang Hwang
Journal:  Nucleic Acids Res       Date:  2007-05-21       Impact factor: 16.971

10.  NCBI BLAST: a better web interface.

Authors:  Mark Johnson; Irena Zaretskaya; Yan Raytselis; Yuri Merezhuk; Scott McGinnis; Thomas L Madden
Journal:  Nucleic Acids Res       Date:  2008-04-24       Impact factor: 16.971

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  3 in total

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Journal:  J Mol Model       Date:  2022-10-24       Impact factor: 2.172

2.  Phytochemicals from Selective Plants Have Promising Potential against SARS-CoV-2: Investigation and Corroboration through Molecular Docking, MD Simulations, and Quantum Computations.

Authors:  Kafila Kousar; Arshia Majeed; Farkhanda Yasmin; Waqar Hussain; Nouman Rasool
Journal:  Biomed Res Int       Date:  2020-10-13       Impact factor: 3.411

3.  Computational Study on Potential Novel Anti-Ebola Virus Protein VP35 Natural Compounds.

Authors:  Louis K S Darko; Emmanuel Broni; Dominic S Y Amuzu; Michael D Wilson; Christian S Parry; Samuel K Kwofie
Journal:  Biomedicines       Date:  2021-11-30
  3 in total

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