Literature DB >> 29907307

DNA assembly standards: Setting the low-level programming code for plant biotechnology.

Marta Vazquez-Vilar1, Diego Orzaez2, Nicola Patron3.   

Abstract

Synthetic Biology is defined as the application of engineering principles to biology. It aims to increase the speed, ease and predictability with which desirable changes and novel traits can be conferred to living cells. The initial steps in this process aim to simplify the encoding of new instructions in DNA by establishing low-level programming languages for biology. Together with advances in the laboratory that allow multiple DNA molecules to be efficiently assembled together into a desired order in a single step, this approach has simplified the design and assembly of multigene constructs and has even facilitated the automated construction of synthetic chromosomes. These advances and technologies are now being applied to plants, for which there are a growing number of software and wetware tools for the design, construction and delivery of DNA molecules and for the engineering of endogenous genes. Here we review the efforts of the past decade that have established synthetic biology workflows and tools for plants and discuss the constraints and bottlenecks of this emerging field.
Copyright © 2018 Elsevier B.V. All rights reserved.

Keywords:  Biotechnology; CRISPR; DNA assembly; Genome engineering; Laboratory automation; Molecular cloning; Synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29907307     DOI: 10.1016/j.plantsci.2018.02.024

Source DB:  PubMed          Journal:  Plant Sci        ISSN: 0168-9452            Impact factor:   4.729


  8 in total

1.  CyanoGate: A Modular Cloning Suite for Engineering Cyanobacteria Based on the Plant MoClo Syntax.

Authors:  Ravendran Vasudevan; Grant A R Gale; Alejandra A Schiavon; Anton Puzorjov; John Malin; Michael D Gillespie; Konstantinos Vavitsas; Valentin Zulkower; Baojun Wang; Christopher J Howe; David J Lea-Smith; Alistair J McCormick
Journal:  Plant Physiol       Date:  2019-02-28       Impact factor: 8.340

Review 2.  Synthetic Switches and Regulatory Circuits in Plants.

Authors:  Jennifer Andres; Tim Blomeier; Matias D Zurbriggen
Journal:  Plant Physiol       Date:  2019-01-28       Impact factor: 8.340

3.  Plant metabolic engineering in the synthetic biology era: plant chassis selection.

Authors:  C Neal Stewart; Nicola Patron; Andrew D Hanson; Joseph M Jez
Journal:  Plant Cell Rep       Date:  2018-09-08       Impact factor: 4.570

4.  Genetic variation among einkorn genotypes based on gene targeted functional markers and its possible relationship with drought tolerance at seed germination stage.

Authors:  Enes Gokhan Yilmaz; Iskender Tiryaki; Ugur Sari
Journal:  Mol Biol Rep       Date:  2022-06-18       Impact factor: 2.742

Review 5.  Synthetic biology approaches for improving photosynthesis.

Authors:  Armin Kubis; Arren Bar-Even
Journal:  J Exp Bot       Date:  2019-03-11       Impact factor: 6.992

6.  A memory switch for plant synthetic biology based on the phage ϕC31 integration system.

Authors:  Joan Miquel Bernabé-Orts; Alfredo Quijano-Rubio; Marta Vazquez-Vilar; Javier Mancheño-Bonillo; Victor Moles-Casas; Sara Selma; Silvia Gianoglio; Antonio Granell; Diego Orzaez
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

7.  Rational design of minimal synthetic promoters for plants.

Authors:  Yao-Min Cai; Kalyani Kallam; Henry Tidd; Giovanni Gendarini; Amanda Salzman; Nicola J Patron
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

8.  Biofoundry-assisted expression and characterization of plant proteins.

Authors:  Quentin M Dudley; Yao-Min Cai; Kalyani Kallam; Hubert Debreyne; Jose A Carrasco Lopez; Nicola J Patron
Journal:  Synth Biol (Oxf)       Date:  2021-09-11
  8 in total

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