| Literature DB >> 29875822 |
Jenni Kesäniemi1, Zbyszek Boratyński2, John Danforth1, Prince Itam1, Toni Jernfors1, Anton Lavrinienko1, Tapio Mappes3, Anders Pape Møller4, Timothy A Mousseau5, Phillip C Watts1.
Abstract
Entities:
Keywords: ecological genetics; molecular evolution; population ecology
Year: 2018 PMID: 29875822 PMCID: PMC5978973 DOI: 10.1111/eva.12578
Source DB: PubMed Journal: Evol Appl ISSN: 1752-4571 Impact factor: 5.183
Figure 1Location of sites within and outside the Chernobyl Exclusion Zone (CEZ) from which bank voles were collected, as described by Meeks et al. (2007) (filled circles) and by Baker et al. (2017) (open circles). CNPP refers to the location of the former Chernobyl Nuclear Power Plant (filled square) and circles indicate 10‐km and 30‐km radius from the CNPP. Contaminated sample sites are CL—Glyboke Lake and RF—Red Forest. Uncontaminated (references) sample sites are NZ—Nezamozhnya, ND—Nedanchychy, OR—Oranoe, PA—Paryshev, ST—Stupnikovo and KR—Krasnoye. ND 2017 refers to the Nedanchychy location reported by Baker et al. (2017), while ND 2007 refers to the location of the site used by Meeks et al. (2007): note that the coordinates for the Red Forest contaminated site in Baker et al. (2017) are ~12 km from the original Red Forest site. Map was created in R v.3.3.3 (R Development Core Team, 2014) using GGMAP v. 2.6.1 (Kahle & Wickham, 2016)
Figure 2Rarefaction curves of mitochondrial genetic diversity (number of haplotypes at the ND4 locus) against sample size for ten samples of bank voles from sites that were contaminated (filled circles, solid lines) or uncontaminated (open circles, dashed lines) by environmental radioactivity. Sample codes are CL—Glyboke Lake, RF—Red Forest, NZ—Nezamozhnya, ND—Nedanchychy and OR—Oranoe
Heteroplasmy (Hp) estimates in each of the samples separately
| Locality | Year | NB | NHp | Proportion of Hp individuals | Hp sites/individual | Average frequency of heteroplasmies |
|---|---|---|---|---|---|---|
| Uncontaminated | ||||||
| Nedanchychy | 1998 | 11 | 11 | 0.727 | 1.182 | 0.134 |
| Nedanchychy | 2011 | 12 | 12 | 0.750 | 1.250 | 0.076 |
| Nezamozhnya | 1998 | 12 | 11 (12) | 0.636 (0.667) | 1.000 (3.083) | 0.031 |
| Nezamozhnya | 2011 | 12 | 10 | 0.500 | 0.900 | 0.110 |
| Oranoe | 1998 | 15 | 12 (13) | 0.583 (0.615) | 0.833 (2.231) | 0.083 |
| Oranoe | 2011 | 14 | 11 | 0.545 | 0.909 | 0.134 |
| In total | 76 | 67 (69) | 0.627 (0.638) | 1.015 (1.638) | 0.078 | |
| Contaminated | ||||||
| Glyboke Lake | 1998 | 15 | 14 | 0.571 | 0.929 | 0.032 |
| Glyboke Lake | 2011 | 3 | 3 | 0.667 | 1.000 | 0.070 |
| Red Forest | 1998 | 20 | 18 | 0.722 | 1.167 | 0.055 |
| Red Forest | 2011 | 17 | 11 | 0.455 | 0.455 | 0.062 |
| In total | 55 | 46 | 0.609 | 0.913 | 0.050 | |
For the average frequency of all heteroplasmies, frequency of the heteroplasmic allele was calculated separately for each heteroplasmy site within individuals. For the two samples with “outlier” individuals, Nezamozhnya and Oranoe (both 1998), values in parentheses are the estimates including the outliers. NB represent the original sample sizes in Baker et al. (2017), while NHp is the amount of individuals used in the present heteroplasmy analysis.
Summarized results of generalized linear mixed models (GLMM) testing the effects of contamination and sampling year on the levels of heteroplasmy (Hp) of bank voles from contaminated and uncontaminated sites
|
|
| |||
|---|---|---|---|---|
| Proportion of Hp individuals | ||||
| Effect | Estimate |
| Estimate |
|
| Intercept | 0.765 | .018 | 0.697 | .033 |
| Contaminated site | −0.196 | .625 | −0.145 | .719 |
| Year 2011 | −0.406 | .308 | −0.353 | .377 |
| Hp sites/individual | ||||
| Effect | Estimate |
| Estimate |
|
| Intercept | 0.777 | <.001 | 0.094 | .534 |
| Contaminated site | −0.697 | <.001 | −0.137 | .493 |
| Year 2011 | −0.727 | <.001 | −0.167 | .401 |
GLMM was run with all available individuals (n = 115) and a reduced data set with the two outlier individuals from uncontaminated sites removed (n = 113).