Literature DB >> 29874577

A Bacterial Growth Law out of Steady State.

Yael Korem Kohanim1, Dikla Levi2, Ghil Jona2, Benjamin D Towbin3, Anat Bren1, Uri Alon4.   

Abstract

Bacterial growth follows simple laws in constant conditions. However, bacteria in nature often face fluctuating environments. We therefore ask whether there are growth laws that apply to changing environments. We derive a law for upshifts using an optimal resource-allocation model: the post-shift growth rate equals the geometrical mean of the pre-shift growth rate and the growth rate on saturating carbon. We test this using chemostat and batch culture experiments, as well as previous data from several species. The increase in growth rate after an upshift indicates that ribosomes have spare capacity (SC). We demonstrate theoretically that SC has the cost of slow steady-state growth but is beneficial after an upshift because it prevents large overshoots in intracellular metabolites and allows rapid response to change. We also provide predictions for downshifts. The present study quantifies the optimal degree of SC, which rises the slower the growth rate, and suggests that SC can be precisely regulated.
Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  bacterial growth laws; biological physics; cellular regulation; non-equilibrium; nutritional shifts; optimality; quantitative evolutionary design; resource allocation; safety factors; systems biology

Mesh:

Year:  2018        PMID: 29874577     DOI: 10.1016/j.celrep.2018.05.007

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  16 in total

1.  Metabolic activity affects the response of single cells to a nutrient switch in structured populations.

Authors:  Alma Dal Co; Martin Ackermann; Simon van Vliet
Journal:  J R Soc Interface       Date:  2019-07-10       Impact factor: 4.118

2.  Ribosome Dimerization Protects the Small Subunit.

Authors:  Heather A Feaga; Mykhailo Kopylov; Jenny Kim Kim; Marko Jovanovic; Jonathan Dworkin
Journal:  J Bacteriol       Date:  2020-04-27       Impact factor: 3.490

Review 3.  Cellular resource allocation strategies for cell size and shape control in bacteria.

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Journal:  FEBS J       Date:  2021-10-19       Impact factor: 5.622

4.  Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions.

Authors:  Sophia Hsin-Jung Li; Zhiyuan Li; Junyoung O Park; Christopher G King; Joshua D Rabinowitz; Ned S Wingreen; Zemer Gitai
Journal:  Nat Microbiol       Date:  2018-07-23       Impact factor: 17.745

Review 5.  New microorganism isolation techniques with emphasis on laser printing.

Authors:  V S Cheptsov; S I Tsypina; N V Minaev; V I Yusupov; B N Chichkov
Journal:  Int J Bioprint       Date:  2018-12-14

6.  Ribosome Provisioning Activates a Bistable Switch Coupled to Fast Exit from Stationary Phase.

Authors:  Philippe Remigi; Gayle C Ferguson; Ellen McConnell; Silvia De Monte; David W Rogers; Paul B Rainey
Journal:  Mol Biol Evol       Date:  2019-05-01       Impact factor: 16.240

7.  Winner-takes-all resource competition redirects cascading cell fate transitions.

Authors:  Rong Zhang; Hanah Goetz; Juan Melendez-Alvarez; Jiao Li; Tian Ding; Xiao Wang; Xiao-Jun Tian
Journal:  Nat Commun       Date:  2021-02-08       Impact factor: 14.919

8.  A distinct growth physiology enhances bacterial growth under rapid nutrient fluctuations.

Authors:  Jen Nguyen; Vicente Fernandez; Sammy Pontrelli; Uwe Sauer; Martin Ackermann; Roman Stocker
Journal:  Nat Commun       Date:  2021-06-16       Impact factor: 17.694

9.  Protein Stability Buffers the Cost of Translation Attenuation following eIF2α Phosphorylation.

Authors:  Kim Schneider; Geoffrey Michael Nelson; Joseph Luke Watson; Jörg Morf; Maximillian Dalglish; Laura Martina Luh; Annika Weber; Anne Bertolotti
Journal:  Cell Rep       Date:  2020-09-15       Impact factor: 9.423

Review 10.  Technological tools and strategies for culturing human gut microbiota in engineered in vitro models.

Authors:  Lorenzo Sardelli; Simone Perottoni; Marta Tunesi; Lucia Boeri; Federica Fusco; Paola Petrini; Diego Albani; Carmen Giordano
Journal:  Biotechnol Bioeng       Date:  2021-05-24       Impact factor: 4.530

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