Literature DB >> 29870015

Carbonic anhydrase II microcrystals suitable for XFEL studies.

Carrie L Lomelino1, Jin Kyun Kim2, Cheol Lee2, Seon Woo Lim2, Jacob T Andring1, Brian P Mahon1, Moses Chung2, Chae Un Kim2, Robert McKenna1.   

Abstract

Recent advances in X-ray free-electron laser (XFEL) sources have permitted the study of protein dynamics. Femtosecond X-ray pulses have allowed the visualization of intermediate states in enzyme catalysis. In this study, the growth of carbonic anhydrase II microcrystals (40-80 µm in length) suitable for the collection of XFEL diffraction data at the Pohang Accelerator Laboratory is demonstrated. The crystals diffracted to 1.7 Å resolution and were indexed in space group P21, with unit-cell parameters a = 42.2, b = 41.2, c = 72.0 Å, β = 104.2°. These preliminary results provide the necessary framework for time-resolved experiments to study carbonic anhydrase catalysis at XFEL beamlines.

Entities:  

Keywords:  X-ray free-electron lasers; XFELs; carbonic anhydrase II; microcrystals; serial femtosecond crystallography; time-resolved crystallography

Mesh:

Substances:

Year:  2018        PMID: 29870015      PMCID: PMC5987739          DOI: 10.1107/S2053230X18006118

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  18 in total

1.  Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.

Authors:  Michihiro Suga; Fusamichi Akita; Michihiro Sugahara; Minoru Kubo; Yoshiki Nakajima; Takanori Nakane; Keitaro Yamashita; Yasufumi Umena; Makoto Nakabayashi; Takahiro Yamane; Takamitsu Nakano; Mamoru Suzuki; Tetsuya Masuda; Shigeyuki Inoue; Tetsunari Kimura; Takashi Nomura; Shinichiro Yonekura; Long-Jiang Yu; Tomohiro Sakamoto; Taiki Motomura; Jing-Hua Chen; Yuki Kato; Takumi Noguchi; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Eriko Nango; Rie Tanaka; Hisashi Naitow; Yoshinori Matsuura; Ayumi Yamashita; Masaki Yamamoto; Osamu Nureki; Makina Yabashi; Tetsuya Ishikawa; So Iwata; Jian-Ren Shen
Journal:  Nature       Date:  2017-02-20       Impact factor: 49.962

2.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

Authors:  Kanupriya Pande; Christopher D M Hutchison; Gerrit Groenhof; Andy Aquila; Josef S Robinson; Jason Tenboer; Shibom Basu; Sébastien Boutet; Daniel P DePonte; Mengning Liang; Thomas A White; Nadia A Zatsepin; Oleksandr Yefanov; Dmitry Morozov; Dominik Oberthuer; Cornelius Gati; Ganesh Subramanian; Daniel James; Yun Zhao; Jake Koralek; Jennifer Brayshaw; Christopher Kupitz; Chelsie Conrad; Shatabdi Roy-Chowdhury; Jesse D Coe; Markus Metz; Paulraj Lourdu Xavier; Thomas D Grant; Jason E Koglin; Gihan Ketawala; Raimund Fromme; Vukica Šrajer; Robert Henning; John C H Spence; Abbas Ourmazd; Peter Schwander; Uwe Weierstall; Matthias Frank; Petra Fromme; Anton Barty; Henry N Chapman; Keith Moffat; Jasper J van Thor; Marius Schmidt
Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

3.  Structural study of interaction between brinzolamide and dorzolamide inhibition of human carbonic anhydrases.

Authors:  Melissa A Pinard; Christopher D Boone; Brittany D Rife; Claudiu T Supuran; Robert McKenna
Journal:  Bioorg Med Chem       Date:  2013-08-28       Impact factor: 3.641

4.  Entrapment of carbon dioxide in the active site of carbonic anhydrase II.

Authors:  John F Domsic; Balendu Sankara Avvaru; Chae Un Kim; Sol M Gruner; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

5.  Functional consequences of engineering the hydrophobic pocket of carbonic anhydrase II.

Authors:  C A Fierke; T L Calderone; J F Krebs
Journal:  Biochemistry       Date:  1991-11-19       Impact factor: 3.162

Review 6.  Sequestration of carbon dioxide by the hydrophobic pocket of the carbonic anhydrases.

Authors:  John F Domsic; Robert McKenna
Journal:  Biochim Biophys Acta       Date:  2009-08-11

7.  Tracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals.

Authors:  Chae Un Kim; HyoJin Song; Balendu Sankara Avvaru; Sol M Gruner; SangYoun Park; Robert McKenna
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-25       Impact factor: 11.205

8.  Active-site solvent replenishment observed during human carbonic anhydrase II catalysis.

Authors:  Jin Kyun Kim; Carrie L Lomelino; Balendu Sankara Avvaru; Brian P Mahon; Robert McKenna; SangYoun Park; Chae Un Kim
Journal:  IUCrJ       Date:  2018-01-01       Impact factor: 4.769

Review 9.  XFELs for structure and dynamics in biology.

Authors:  J C H Spence
Journal:  IUCrJ       Date:  2017-05-10       Impact factor: 4.769

10.  Hidden alternative structures of proline isomerase essential for catalysis.

Authors:  James S Fraser; Michael W Clarkson; Sheena C Degnan; Renske Erion; Dorothee Kern; Tom Alber
Journal:  Nature       Date:  2009-12-03       Impact factor: 49.962

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  3 in total

Review 1.  An outlook on using serial femtosecond crystallography in drug discovery.

Authors:  Alexey Mishin; Anastasiia Gusach; Aleksandra Luginina; Egor Marin; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Expert Opin Drug Discov       Date:  2019-06-11       Impact factor: 6.098

Review 2.  Crystallography and Its Impact on Carbonic Anhydrase Research.

Authors:  Carrie L Lomelino; Jacob T Andring; Robert McKenna
Journal:  Int J Med Chem       Date:  2018-09-13

3.  Protein-crystal detection with a compact multimodal multiphoton microscope.

Authors:  Qing-di Cheng; Hsiang-Yu Chung; Robin Schubert; Shih-Hsuan Chia; Sven Falke; Celestin Nzanzu Mudogo; Franz X Kärtner; Guoqing Chang; Christian Betzel
Journal:  Commun Biol       Date:  2020-10-13
  3 in total

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