Literature DB >> 29863359

Mechanism of Cardiac Tropomyosin Transitions on Filamentous Actin As Revealed by All-Atom Steered Molecular Dynamics Simulations.

Michael R Williams1, Jil C Tardiff2,3, Steven D Schwartz1.   

Abstract

The three-state model of tropomyosin (Tm) positioning along filamentous actin allows for Tm to act as a gate for myosin head binding with actin. The blocked state of Tm prevents myosin binding, while the open state allows for strong binding. Intermediate to this transition is the closed state. The details of the transition from the blocked to the closed state and then finally to the open state by Tm have not been fully accessible to experiment. Utilizing steered molecular dynamics, we investigate the work required to move the Tm strand through the extant set of proposed transitions. We find that an azimuthal motion around the actin filament by Tm is most probable in spite of increased initial energy barrier from the topographical landscape of actin.

Entities:  

Year:  2018        PMID: 29863359      PMCID: PMC6019281          DOI: 10.1021/acs.jpclett.8b00958

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  23 in total

1.  Calculating potentials of mean force from steered molecular dynamics simulations.

Authors:  Sanghyun Park; Klaus Schulten
Journal:  J Chem Phys       Date:  2004-04-01       Impact factor: 3.488

2.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

3.  Changes in the chemical and dynamic properties of cardiac troponin T cause discrete cardiomyopathies in transgenic mice.

Authors:  Briar R Ertz-Berger; Huamei He; Candice Dowell; Stephen M Factor; Todd E Haim; Sara Nunez; Steven D Schwartz; Joanne S Ingwall; Jil C Tardiff
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-02       Impact factor: 11.205

Review 4.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

5.  Structural biology: actin in a twist.

Authors:  Kenneth C Holmes
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

6.  Tropomyosin movement on F-actin during muscle activation explained by energy landscapes.

Authors:  Marek Orzechowski; Jeffrey R Moore; Stefan Fischer; William Lehman
Journal:  Arch Biochem Biophys       Date:  2014-01-08       Impact factor: 4.013

7.  Structural mechanism of the recovery stroke in the myosin molecular motor.

Authors:  Stefan Fischer; Björn Windshügel; Daniel Horak; Kenneth C Holmes; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-29       Impact factor: 11.205

8.  A model of calcium activation of the cardiac thin filament.

Authors:  Edward P Manning; Jil C Tardiff; Steven D Schwartz
Journal:  Biochemistry       Date:  2011-08-05       Impact factor: 3.162

9.  Correlation of molecular and functional effects of mutations in cardiac troponin T linked to familial hypertrophic cardiomyopathy: an integrative in silico/in vitro approach.

Authors:  Edward P Manning; Pia J Guinto; Jil C Tardiff
Journal:  J Biol Chem       Date:  2012-02-13       Impact factor: 5.157

10.  Molecular effects of familial hypertrophic cardiomyopathy-related mutations in the TNT1 domain of cTnT.

Authors:  Edward P Manning; Jil C Tardiff; Steven D Schwartz
Journal:  J Mol Biol       Date:  2012-05-10       Impact factor: 5.469

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  10 in total

Review 1.  A new twist on tropomyosin binding to actin filaments: perspectives on thin filament function, assembly and biomechanics.

Authors:  William Lehman; Michael J Rynkiewicz; Jeffrey R Moore
Journal:  J Muscle Res Cell Motil       Date:  2019-02-15       Impact factor: 2.698

2.  The Effect of Tropomyosin Mutations on Actin-Tropomyosin Binding: In Search of Lost Time.

Authors:  William Lehman; Jeffrey R Moore; Stuart G Campbell; Michael J Rynkiewicz
Journal:  Biophys J       Date:  2019-05-13       Impact factor: 4.033

3.  Precise Binding of Tropomyosin on Actin Involves Sequence-Dependent Variance in Coiled-Coil Twisting.

Authors:  William Lehman; Xiaochuan Li; Farooq A Kiani; Jeffrey R Moore; Stuart G Campbell; Stefan Fischer; Michael J Rynkiewicz
Journal:  Biophys J       Date:  2018-08-18       Impact factor: 4.033

4.  Piecewise All-Atom SMD Simulations Reveal Key Secondary Structures in Luciferase Unfolding Pathway.

Authors:  Pan Zhang; David Wang; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2020-10-30       Impact factor: 4.033

5.  Structure and Dynamics of the Flexible Cardiac Troponin T Linker Domain in a Fully Reconstituted Thin Filament.

Authors:  Andrea E Deranek; Anthony P Baldo; Melissa L Lynn; Steven D Schwartz; Jil C Tardiff
Journal:  Biochemistry       Date:  2022-06-13       Impact factor: 3.321

Review 6.  Modeling Human Cardiac Thin Filament Structures.

Authors:  Michael J Rynkiewicz; Elumalai Pavadai; William Lehman
Journal:  Front Physiol       Date:  2022-06-22       Impact factor: 4.755

7.  A Proposed Mechanism for the Initial Myosin Binding Event on the Cardiac Thin Filament: A Metadynamics Study.

Authors:  Anthony P Baldo; Jil C Tardiff; Steven D Schwartz
Journal:  J Phys Chem Lett       Date:  2021-04-01       Impact factor: 6.475

8.  Modulating the tension-time integral of the cardiac twitch prevents dilated cardiomyopathy in murine hearts.

Authors:  Joseph D Powers; Kristina B Kooiker; Allison B Mason; Abigail E Teitgen; Galina V Flint; Jil C Tardiff; Steven D Schwartz; Andrew D McCulloch; Michael Regnier; Jennifer Davis; Farid Moussavi-Harami
Journal:  JCI Insight       Date:  2020-10-15

9.  Computational and biophysical determination of pathogenicity of variants of unknown significance in cardiac thin filament.

Authors:  Allison B Mason; Melissa L Lynn; Anthony P Baldo; Andrea E Deranek; Jil C Tardiff; Steven D Schwartz
Journal:  JCI Insight       Date:  2021-12-08

10.  Loss of crossbridge inhibition drives pathological cardiac hypertrophy in patients harboring the TPM1 E192K mutation.

Authors:  Lorenzo R Sewanan; Jinkyu Park; Michael J Rynkiewicz; Alice W Racca; Nikolaos Papoutsidakis; Jonas Schwan; Daniel L Jacoby; Jeffrey R Moore; William Lehman; Yibing Qyang; Stuart G Campbell
Journal:  J Gen Physiol       Date:  2021-07-28       Impact factor: 4.086

  10 in total

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