Literature DB >> 30195938

Precise Binding of Tropomyosin on Actin Involves Sequence-Dependent Variance in Coiled-Coil Twisting.

William Lehman1, Xiaochuan Li2, Farooq A Kiani2, Jeffrey R Moore3, Stuart G Campbell4, Stefan Fischer5, Michael J Rynkiewicz2.   

Abstract

Often considered an archetypal dimeric coiled coil, tropomyosin nonetheless exhibits distinctive "noncanonical" core residues located at the hydrophobic interface between its component α-helices. Notably, a charged aspartate, D137, takes the place of nonpolar residues otherwise present. Much speculation has been offered to rationalize potential local coiled-coil instability stemming from D137 and its effect on regulatory transitions of tropomyosin over actin filaments. Although experimental approaches such as electron cryomicroscopy reconstruction are optimal for defining average tropomyosin positions on actin filaments, to date, these methods have not captured the dynamics of tropomyosin residues clustered around position 137 or elsewhere. In contrast, computational biochemistry, involving molecular dynamics simulation, is a compelling choice to extend the understanding of local and global tropomyosin behavior on actin filaments at high resolution. Here, we report on molecular dynamics simulation of actin-free and actin-associated tropomyosin, showing noncanonical residue D137 as a locus for tropomyosin twist variation, with marked effects on actin-tropomyosin interactions. We conclude that D137-sponsored coiled-coil twisting is likely to optimize electrostatic side-chain contacts between tropomyosin and actin on the assembled thin filament, while offsetting disparities between tropomyosin pseudorepeat and actin subunit periodicities. We find that D137 has only minor local effects on tropomyosin coiled-coil flexibility, (i.e., on its flexural mobility). Indeed, D137-associated overtwisting may actually augment tropomyosin stiffness on actin filaments. Accordingly, such twisting-induced stiffness of tropomyosin is expected to enhance cooperative regulatory translocation of the tropomyosin cable over actin.
Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 30195938      PMCID: PMC6139885          DOI: 10.1016/j.bpj.2018.08.017

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

Review 1.  The structure of alpha-helical coiled coils.

Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

Review 2.  Regulation of muscle contraction by tropomyosin and troponin: how structure illuminates function.

Authors:  Jerry H Brown; Carolyn Cohen
Journal:  Adv Protein Chem       Date:  2005

3.  Two-crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule.

Authors:  Shiho Minakata; Kayo Maeda; Naoko Oda; Katsuzo Wakabayashi; Yasushi Nitanai; Yuichiro Maéda
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

Review 4.  Tropomyosin: function follows structure.

Authors:  Sarah E Hitchcock-DeGregori
Journal:  Adv Exp Med Biol       Date:  2008       Impact factor: 2.622

Review 5.  The evolution of compositionally and functionally distinct actin filaments.

Authors:  Peter W Gunning; Umesh Ghoshdastider; Shane Whitaker; David Popp; Robert C Robinson
Journal:  J Cell Sci       Date:  2015-03-18       Impact factor: 5.285

6.  Investigating the effects of tropomyosin mutations on its flexibility and interactions with filamentous actin using molecular dynamics simulation.

Authors:  Wenjun Zheng; Sarah E Hitchcock-DeGregori; Bipasha Barua
Journal:  J Muscle Res Cell Motil       Date:  2016-07-04       Impact factor: 2.698

7.  The propensity for tropomyosin twisting in the presence and absence of F-actin.

Authors:  Michael J Rynkiewicz; Stefan Fischer; William Lehman
Journal:  Arch Biochem Biophys       Date:  2016-09-20       Impact factor: 4.013

8.  Electrostatic interaction map reveals a new binding position for tropomyosin on F-actin.

Authors:  Michael J Rynkiewicz; Veronika Schott; Marek Orzechowski; William Lehman; Stefan Fischer
Journal:  J Muscle Res Cell Motil       Date:  2015-08-19       Impact factor: 2.698

9.  Stabilization of the Central Part of Tropomyosin Molecule Alters the Ca2+-sensitivity of Actin-Myosin Interaction.

Authors:  D V Shchepkin; A M Matyushenko; G V Kopylova; N V Artemova; S Y Bershitsky; A K Tsaturyan; D I Levitsky
Journal:  Acta Naturae       Date:  2013-07       Impact factor: 1.845

10.  Distortion of the Actin A-Triad Results in Contractile Disinhibition and Cardiomyopathy.

Authors:  Meera C Viswanathan; William Schmidt; Michael J Rynkiewicz; Karuna Agarwal; Jian Gao; Joseph Katz; William Lehman; Anthony Cammarato
Journal:  Cell Rep       Date:  2017-09-12       Impact factor: 9.423

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  12 in total

Review 1.  A new twist on tropomyosin binding to actin filaments: perspectives on thin filament function, assembly and biomechanics.

Authors:  William Lehman; Michael J Rynkiewicz; Jeffrey R Moore
Journal:  J Muscle Res Cell Motil       Date:  2019-02-15       Impact factor: 2.698

2.  The Effect of Tropomyosin Mutations on Actin-Tropomyosin Binding: In Search of Lost Time.

Authors:  William Lehman; Jeffrey R Moore; Stuart G Campbell; Michael J Rynkiewicz
Journal:  Biophys J       Date:  2019-05-13       Impact factor: 4.033

Review 3.  Functional outcomes of structural peculiarities of striated muscle tropomyosin.

Authors:  Galina V Kopylova; Alexander M Matyushenko; Natalia A Koubassova; Daniil V Shchepkin; Sergey Y Bershitsky; Dmitrii I Levitsky; Andrey K Tsaturyan
Journal:  J Muscle Res Cell Motil       Date:  2019-09-18       Impact factor: 2.698

4.  Protein-Protein Docking Reveals Dynamic Interactions of Tropomyosin on Actin Filaments.

Authors:  Elumalai Pavadai; William Lehman; Michael J Rynkiewicz
Journal:  Biophys J       Date:  2020-05-22       Impact factor: 4.033

5.  Cardiomyopathy Mutation Alters End-to-End Junction of Tropomyosin and Reduces Calcium Sensitivity.

Authors:  SaiLavanyaa Sundar; Michael J Rynkiewicz; Anita Ghosh; William Lehman; Jeffrey R Moore
Journal:  Biophys J       Date:  2019-12-14       Impact factor: 4.033

6.  Molecular Mechanisms of Muscle Weakness Associated with E173A Mutation in Tpm3.12. Troponin Ca2+ Sensitivity Inhibitor W7 Can Reduce the Damaging Effect of This Mutation.

Authors:  Yurii S Borovikov; Armen O Simonyan; Stanislava V Avrova; Vladimir V Sirenko; Charles S Redwood; Olga E Karpicheva
Journal:  Int J Mol Sci       Date:  2020-06-22       Impact factor: 5.923

7.  Looking for Targets to Restore the Contractile Function in Congenital Myopathy Caused by Gln147Pro Tropomyosin.

Authors:  Olga E Karpicheva; Armen O Simonyan; Nikita A Rysev; Charles S Redwood; Yurii S Borovikov
Journal:  Int J Mol Sci       Date:  2020-10-14       Impact factor: 5.923

8.  Molecular Mechanisms of the Deregulation of Muscle Contraction Induced by the R90P Mutation in Tpm3.12 and the Weakening of This Effect by BDM and W7.

Authors:  Yurii S Borovikov; Daria D Andreeva; Stanislava V Avrova; Vladimir V Sirenko; Armen O Simonyan; Charles S Redwood; Olga E Karpicheva
Journal:  Int J Mol Sci       Date:  2021-06-12       Impact factor: 5.923

9.  Impact of A134 and E218 Amino Acid Residues of Tropomyosin on Its Flexibility and Function.

Authors:  Marina A Marchenko; Victoria V Nefedova; Daria S Yampolskaya; Galina V Kopylova; Daniil V Shchepkin; Sergey Y Bershitsky; Natalia A Koubassova; Andrey K Tsaturyan; Dmitrii I Levitsky; Alexander M Matyushenko
Journal:  Int J Mol Sci       Date:  2020-11-18       Impact factor: 5.923

10.  Cryo-EM and Molecular Docking Shows Myosin Loop 4 Contacts Actin and Tropomyosin on Thin Filaments.

Authors:  Matthew H Doran; Elumalai Pavadai; Michael J Rynkiewicz; Jonathan Walklate; Esther Bullitt; Jeffrey R Moore; Michael Regnier; Michael A Geeves; William Lehman
Journal:  Biophys J       Date:  2020-07-16       Impact factor: 4.033

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