Literature DB >> 29857068

Genomic Analyses Identify Recurrent Alterations in Immune Evasion Genes in Diffuse Large B-Cell Lymphoma, Leg Type.

Xiaolong Alan Zhou1, Abner Louissaint2, Alexander Wenzel3, Jingyi Yang4, Maria Estela Martinez-Escala1, Andrea P Moy2, Elizabeth A Morgan5, Christian N Paxton6, Bo Hong7, Erica F Andersen7, Joan Guitart1, Amir Behdad8, Lorenzo Cerroni9, David M Weinstock10, Jaehyuk Choi11.   

Abstract

Cutaneous diffuse large B-cell lymphomas (DLBCLs) are aggressive lymphomas with a poor prognosis. To elucidate their genetic bases, we analyzed exome sequencing of 37 cutaneous DLBCLs, including 31 DLBCLs, leg type (DLBCL-LT) and 6 cutaneous DLBCLs-not otherwise specified (DLBCL-NOS). As reported previously, 77% of DLBCL-LT harbor NF-κB-activating MYD88 mutations. In nearly all MYD88-wild-type DLBCL-LT, we found cancer-promoting mutations that either activate the NF-κB pathway through alternative genes (NFKBIE or REL) or activate other canonical cancer pathways (BRAF, MED12, PIK3R1, and STAT3). After NF-κB, the second most commonly mutated pathway putatively enables immune evasion via mutations predicted to downregulate antigen processing (B2M, CIITA, HLA) or T-cell co-stimulation (CD58). DLBCL-LT have little genetic overlap with the genetically heterogeneous DLBCL-NOS. Instead, they resemble primary central nervous system and testicular large B-cell lymphomas (primary central nervous system lymphomas and primary testicular lymphomas). Like primary central nervous system lymphomas/primary testicular lymphomas, 40% of DLBCL-LT (vs. 0% of DLBCLs-not otherwise specified) harbored PDL1/PDL2 translocations, which lead to overexpression of PD-L1 or PD-L2 in 50% of the cases. Collectively, these data broaden our understanding of cutaneous DLBCLs and suggest novel therapeutic approaches (e.g., BRAF or PI3K inhibitors). Additionally, they suggest novel treatment paradigms, wherein DLBCL-LT can be targeted with strategies (e.g., immune checkpoint blockers) currently being developed for genomically similar primary central nervous system lymphomas/primary testicular lymphomas.
Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29857068      PMCID: PMC6200585          DOI: 10.1016/j.jid.2018.04.038

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  42 in total

Review 1.  The 2016 revision of the World Health Organization classification of lymphoid neoplasms.

Authors:  Steven H Swerdlow; Elias Campo; Stefano A Pileri; Nancy Lee Harris; Harald Stein; Reiner Siebert; Ranjana Advani; Michele Ghielmini; Gilles A Salles; Andrew D Zelenetz; Elaine S Jaffe
Journal:  Blood       Date:  2016-03-15       Impact factor: 22.113

2.  Low expression of p27 protein combined with altered p53 and Rb/p16 expression status is associated with increased expression of cyclin A and cyclin B1 in diffuse large B-cell lymphomas.

Authors:  M Bai; J Vlachonikolis; N J Agnantis; E Tsanou; S Dimou; C Nicolaides; S Stefanaki; N Pavlidis; P Kanavaros; P Kanavarous
Journal:  Mod Pathol       Date:  2001-11       Impact factor: 7.842

3.  Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer.

Authors:  Naiyer A Rizvi; Matthew D Hellmann; Alexandra Snyder; Pia Kvistborg; Vladimir Makarov; Jonathan J Havel; William Lee; Jianda Yuan; Phillip Wong; Teresa S Ho; Martin L Miller; Natasha Rekhtman; Andre L Moreira; Fawzia Ibrahim; Cameron Bruggeman; Billel Gasmi; Roberta Zappasodi; Yuka Maeda; Chris Sander; Edward B Garon; Taha Merghoub; Jedd D Wolchok; Ton N Schumacher; Timothy A Chan
Journal:  Science       Date:  2015-03-12       Impact factor: 47.728

4.  Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: a single-arm, multicentre, phase 2 trial.

Authors:  Jonathan E Rosenberg; Jean Hoffman-Censits; Tom Powles; Michiel S van der Heijden; Arjun V Balar; Andrea Necchi; Nancy Dawson; Peter H O'Donnell; Ani Balmanoukian; Yohann Loriot; Sandy Srinivas; Margitta M Retz; Petros Grivas; Richard W Joseph; Matthew D Galsky; Mark T Fleming; Daniel P Petrylak; Jose Luis Perez-Gracia; Howard A Burris; Daniel Castellano; Christina Canil; Joaquim Bellmunt; Dean Bajorin; Dorothee Nickles; Richard Bourgon; Garrett M Frampton; Na Cui; Sanjeev Mariathasan; Oyewale Abidoye; Gregg D Fine; Robert Dreicer
Journal:  Lancet       Date:  2016-03-04       Impact factor: 79.321

5.  Somatic mutations in p85alpha promote tumorigenesis through class IA PI3K activation.

Authors:  Bijay S Jaiswal; Vasantharajan Janakiraman; Noelyn M Kljavin; Subhra Chaudhuri; Howard M Stern; Weiru Wang; Zhengyan Kan; Hashem A Dbouk; Brock A Peters; Paul Waring; Trisha Dela Vega; Denise M Kenski; Krista K Bowman; Maria Lorenzo; Hong Li; Jiansheng Wu; Zora Modrusan; Jeremy Stinson; Michael Eby; Peng Yue; Josh S Kaminker; Frederic J de Sauvage; Jonathan M Backer; Somasekar Seshagiri
Journal:  Cancer Cell       Date:  2009-12-08       Impact factor: 31.743

6.  Alterations in CIITA constitute a common mechanism accounting for downregulation of MHC class II expression in diffuse large B-cell lymphoma (DLBCL).

Authors:  Kelly A Cycon; Lisa M Rimsza; Shawn P Murphy
Journal:  Exp Hematol       Date:  2008-12-09       Impact factor: 3.084

7.  Expression of programmed cell death ligand 1 is associated with poor overall survival in patients with diffuse large B-cell lymphoma.

Authors:  Junichi Kiyasu; Hiroaki Miyoshi; Akie Hirata; Fumiko Arakawa; Ayako Ichikawa; Daisuke Niino; Yasuo Sugita; Yuji Yufu; Ilseung Choi; Yasunobu Abe; Naokuni Uike; Koji Nagafuji; Takashi Okamura; Koichi Akashi; Ryoichi Takayanagi; Motoaki Shiratsuchi; Koichi Ohshima
Journal:  Blood       Date:  2015-08-03       Impact factor: 22.113

8.  Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma.

Authors:  Anupama Reddy; Jenny Zhang; Nicholas S Davis; Andrea B Moffitt; Cassandra L Love; Alexander Waldrop; Sirpa Leppa; Annika Pasanen; Leo Meriranta; Marja-Liisa Karjalainen-Lindsberg; Peter Nørgaard; Mette Pedersen; Anne O Gang; Estrid Høgdall; Tayla B Heavican; Waseem Lone; Javeed Iqbal; Qiu Qin; Guojie Li; So Young Kim; Jane Healy; Kristy L Richards; Yuri Fedoriw; Leon Bernal-Mizrachi; Jean L Koff; Ashley D Staton; Christopher R Flowers; Ora Paltiel; Neta Goldschmidt; Maria Calaminici; Andrew Clear; John Gribben; Evelyn Nguyen; Magdalena B Czader; Sarah L Ondrejka; Angela Collie; Eric D Hsi; Eric Tse; Rex K H Au-Yeung; Yok-Lam Kwong; Gopesh Srivastava; William W L Choi; Andrew M Evens; Monika Pilichowska; Manju Sengar; Nishitha Reddy; Shaoying Li; Amy Chadburn; Leo I Gordon; Elaine S Jaffe; Shawn Levy; Rachel Rempel; Tiffany Tzeng; Lanie E Happ; Tushar Dave; Deepthi Rajagopalan; Jyotishka Datta; David B Dunson; Sandeep S Dave
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

9.  Mutations of the BRAF gene in human cancer.

Authors:  Helen Davies; Graham R Bignell; Charles Cox; Philip Stephens; Sarah Edkins; Sheila Clegg; Jon Teague; Hayley Woffendin; Mathew J Garnett; William Bottomley; Neil Davis; Ed Dicks; Rebecca Ewing; Yvonne Floyd; Kristian Gray; Sarah Hall; Rachel Hawes; Jaime Hughes; Vivian Kosmidou; Andrew Menzies; Catherine Mould; Adrian Parker; Claire Stevens; Stephen Watt; Steven Hooper; Rebecca Wilson; Hiran Jayatilake; Barry A Gusterson; Colin Cooper; Janet Shipley; Darren Hargrave; Katherine Pritchard-Jones; Norman Maitland; Georgia Chenevix-Trench; Gregory J Riggins; Darell D Bigner; Giuseppe Palmieri; Antonio Cossu; Adrienne Flanagan; Andrew Nicholson; Judy W C Ho; Suet Y Leung; Siu T Yuen; Barbara L Weber; Hilliard F Seigler; Timothy L Darrow; Hugh Paterson; Richard Marais; Christopher J Marshall; Richard Wooster; Michael R Stratton; P Andrew Futreal
Journal:  Nature       Date:  2002-06-09       Impact factor: 49.962

10.  Comprehensive cancer-gene panels can be used to estimate mutational load and predict clinical benefit to PD-1 blockade in clinical practice.

Authors:  Luís Felipe Campesato; Romualdo Barroso-Sousa; Leandro Jimenez; Bruna R Correa; Jorge Sabbaga; Paulo M Hoff; Luiz F L Reis; Pedro Alexandre F Galante; Anamaria A Camargo
Journal:  Oncotarget       Date:  2015-10-27
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  11 in total

Review 1.  The 2018 update of the WHO-EORTC classification for primary cutaneous lymphomas.

Authors:  Rein Willemze; Lorenzo Cerroni; Werner Kempf; Emilio Berti; Fabio Facchetti; Steven H Swerdlow; Elaine S Jaffe
Journal:  Blood       Date:  2019-01-11       Impact factor: 22.113

2.  Effect of ibrutinib with R-CHOP chemotherapy in genetic subtypes of DLBCL.

Authors:  Wyndham H Wilson; George W Wright; Da Wei Huang; Brendan Hodkinson; Sriram Balasubramanian; Yue Fan; Jessica Vermeulen; Martin Shreeve; Louis M Staudt
Journal:  Cancer Cell       Date:  2021-11-04       Impact factor: 31.743

Review 3.  Update in Diagnosis and Management of Primary Cutaneous B-Cell Lymphomas.

Authors:  Amanda Krenitsky; Skylar Klager; Leigh Hatch; Carlos Sarriera-Lazaro; Pei Ling Chen; Lucia Seminario-Vidal
Journal:  Am J Clin Dermatol       Date:  2022-07-19       Impact factor: 6.233

4.  Impact of ETNK1 somatic mutations on phosphoethanolamine synthesis, ROS production and DNA damage.

Authors:  Diletta Fontana; Carlo Gambacorti-Passerini; Rocco Piazza
Journal:  Mol Cell Oncol       Date:  2021-02-19

5.  MYD88 mutations identify a molecular subgroup of diffuse large B-cell lymphoma with an unfavorable prognosis.

Authors:  Joost S Vermaat; Sebastiaan F Somers; Liesbeth C de Wreede; Willem Kraan; Ruben A L de Groen; Anne M R Schrader; Emile D Kerver; Cornelis G Scheepstra; Henriëtte Berenschot; Wendy Deenik; Jurgen Wegman; Rianne Broers; Jan-Paul D de Boer; Marcel Nijland; Tom van Wezel; Hendrik Veelken; Marcel Spaargaren; Arjen H Cleven; Marie José Kersten; Steven T Pals
Journal:  Haematologica       Date:  2020-01-31       Impact factor: 9.941

6.  ETNK1 mutations induce a mutator phenotype that can be reverted with phosphoethanolamine.

Authors:  Diletta Fontana; Mario Mauri; Rossella Renso; Mattia Docci; Ilaria Crespiatico; Lisa M Røst; Mi Jang; Antonio Niro; Deborah D'Aliberti; Luca Massimino; Mayla Bertagna; Giovanni Zambrotta; Mario Bossi; Stefania Citterio; Barbara Crescenzi; Francesca Fanelli; Valeria Cassina; Roberta Corti; Domenico Salerno; Luca Nardo; Clizia Chinello; Francesco Mantegazza; Cristina Mecucci; Fulvio Magni; Guido Cavaletti; Per Bruheim; Delphine Rea; Steen Larsen; Carlo Gambacorti-Passerini; Rocco Piazza
Journal:  Nat Commun       Date:  2020-11-23       Impact factor: 14.919

Review 7.  The MHC Class II Transactivator CIITA: Not (Quite) the Odd-One-Out Anymore among NLR Proteins.

Authors:  Jorge Alfonso León Machado; Viktor Steimle
Journal:  Int J Mol Sci       Date:  2021-01-22       Impact factor: 5.923

8.  Epigenetic Silencing of Tumor Suppressor miR-124 Directly Supports STAT3 Activation in Cutaneous T-Cell Lymphoma.

Authors:  Lidia García-Colmenero; Jéssica González; Juan Sandoval; Yolanda Guillén; Angel Diaz-Lagares; Evelyn Andrades; Arnau Iglesias; Lara Nonell; Ramon Maria Pujol; Anna Bigas; Lluís Espinosa; Fernando Gallardo
Journal:  Cells       Date:  2020-12-15       Impact factor: 6.600

9.  Genomic landscape of cutaneous follicular lymphomas reveals 2 subgroups with clinically predictive molecular features.

Authors:  Xiaolong Alan Zhou; Jingyi Yang; Kimberly G Ringbloom; Maria Estela Martinez-Escala; Kristen E Stevenson; Alexander T Wenzel; Damiano Fantini; Haley K Martin; Andrea P Moy; Elizabeth A Morgan; Shannon Harkins; Christian N Paxton; Bo Hong; Erica F Andersen; Joan Guitart; David M Weinstock; Lorenzo Cerroni; Jaehyuk Choi; Abner Louissaint
Journal:  Blood Adv       Date:  2021-02-09

10.  Biological Approaches to Aggressive Cutaneous B-Cell Lymphomas.

Authors:  Giulia Tadiotto Cicogna; Martina Ferranti; Annalisa Lazzarotto; Mauro Alaibac
Journal:  Front Oncol       Date:  2019-11-13       Impact factor: 6.244

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