Literature DB >> 29852207

Mathematical models of dorsal closure.

A C Aristotelous1, J M Crawford2, G S Edwards3, D P Kiehart4, S Venakides5.   

Abstract

Dorsal closure is a model cell sheet movement that occurs midway through Drosophila embryogenesis. A dorsal hole, filled with amnioserosa, closes through the dorsalward elongation of lateral epidermal cell sheets. Closure requires contributions from 5 distinct tissues and well over 140 genes (see Mortensen et al., 2018, reviewed in Kiehart et al., 2017 and Hayes and Solon, 2017). In spite of this biological complexity, the movements (kinematics) of closure are geometrically simple at tissue, and in certain cases, at cellular scales. This simplicity has made closure the target of a number of mathematical models that seek to explain and quantify the processes that underlie closure's kinematics. The first (purely kinematic) modeling approach recapitulated well the time-evolving geometry of closure even though the underlying physical principles were not known. Almost all subsequent models delve into the forces of closure (i.e. the dynamics of closure). Models assign elastic, contractile and viscous forces which impact tissue and/or cell mechanics. They write rate equations which relate the forces to one another and to other variables, including those which represent geometric, kinematic, and or signaling characteristics. The time evolution of the variables is obtained by computing the solution of the model's system of equations, with optimized model parameters. The basis of the equations range from the phenomenological to biophysical first principles. We review various models and present their contribution to our understanding of the molecular mechanisms and biophysics of closure. Models of closure will contribute to our understanding of similar movements that characterize vertebrate morphogenesis.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Actin; Cell junctions; Cell sheet morphogenesis; Computational; Myosin; Oscillation

Mesh:

Year:  2018        PMID: 29852207      PMCID: PMC6109426          DOI: 10.1016/j.pbiomolbio.2018.05.009

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  62 in total

Review 1.  Integrative approaches to morphogenesis: lessons from dorsal closure.

Authors:  Nicole Gorfinkiel; Sabine Schamberg; Guy B Blanchard
Journal:  Genesis       Date:  2011-03-05       Impact factor: 2.487

2.  Mechanical control of global cell behaviour during dorsal closure in Drosophila.

Authors:  Nicole Gorfinkiel; Guy B Blanchard; Richard J Adams; Alfonso Martinez Arias
Journal:  Development       Date:  2009-04-29       Impact factor: 6.868

Review 3.  Implementing vertex dynamics models of cell populations in biology within a consistent computational framework.

Authors:  Alexander G Fletcher; James M Osborne; Philip K Maini; David J Gavaghan
Journal:  Prog Biophys Mol Biol       Date:  2013-10-09       Impact factor: 3.667

Review 4.  Drosophila dorsal closure: An orchestra of forces to zip shut the embryo.

Authors:  Peran Hayes; Jérôme Solon
Journal:  Mech Dev       Date:  2017-01-07       Impact factor: 1.882

Review 5.  Forces directing germ-band extension in Drosophila embryos.

Authors:  Deqing Kong; Fred Wolf; Jörg Großhans
Journal:  Mech Dev       Date:  2016-12-22       Impact factor: 1.882

6.  Amnioserosa cell constriction but not epidermal actin cable tension autonomously drives dorsal closure.

Authors:  Laurynas Pasakarnis; Erich Frei; Emmanuel Caussinus; Markus Affolter; Damian Brunner
Journal:  Nat Cell Biol       Date:  2016-10-17       Impact factor: 28.824

7.  Modeling and Identification of Amnioserosa Cell Mechanical Behavior by Using Mass-Spring Lattices.

Authors:  Maxime Dureau; Angelo Alessandri; Patrizia Bagnerini; Stephane Vincent
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2016-06-29       Impact factor: 3.710

Review 8.  Computer modeling in developmental biology: growing today, essential tomorrow.

Authors:  James Sharpe
Journal:  Development       Date:  2017-12-01       Impact factor: 6.868

9.  Multiple forces contribute to cell sheet morphogenesis for dorsal closure in Drosophila.

Authors:  D P Kiehart; C G Galbraith; K A Edwards; W L Rickoll; R A Montague
Journal:  J Cell Biol       Date:  2000-04-17       Impact factor: 10.539

10.  A shared neural ensemble links distinct contextual memories encoded close in time.

Authors:  Denise J Cai; Daniel Aharoni; Tristan Shuman; Justin Shobe; Jeremy Biane; Weilin Song; Brandon Wei; Michael Veshkini; Mimi La-Vu; Jerry Lou; Sergio E Flores; Isaac Kim; Yoshitake Sano; Miou Zhou; Karsten Baumgaertel; Ayal Lavi; Masakazu Kamata; Mark Tuszynski; Mark Mayford; Peyman Golshani; Alcino J Silva
Journal:  Nature       Date:  2016-05-23       Impact factor: 49.962

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  2 in total

1.  Dynamics of PAR Proteins Explain the Oscillation and Ratcheting Mechanisms in Dorsal Closure.

Authors:  Clinton H Durney; Tony J C Harris; James J Feng
Journal:  Biophys J       Date:  2018-10-24       Impact factor: 4.033

2.  A Comparative Study of the Role of Formins in Drosophila Embryonic Dorsal Closure.

Authors:  Krisztina Tóth; István Földi; József Mihály
Journal:  Cells       Date:  2022-05-04       Impact factor: 7.666

  2 in total

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