Literature DB >> 29183935

Computer modeling in developmental biology: growing today, essential tomorrow.

James Sharpe1,2,3.   

Abstract

D'Arcy Thompson was a true pioneer, applying mathematical concepts and analyses to the question of morphogenesis over 100 years ago. The centenary of his famous book, On Growth and Form, is therefore a great occasion on which to review the types of computer modeling now being pursued to understand the development of organs and organisms. Here, I present some of the latest modeling projects in the field, covering a wide range of developmental biology concepts, from molecular patterning to tissue morphogenesis. Rather than classifying them according to scientific question, or scale of problem, I focus instead on the different ways that modeling contributes to the scientific process and discuss the likely future of modeling in developmental biology.
© 2017. Published by The Company of Biologists Ltd.

Keywords:  Computer modeling; Developmental biology; Gene circuit; Gene regulatory network; Morphogenesis; Simulation

Mesh:

Year:  2017        PMID: 29183935     DOI: 10.1242/dev.151274

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  18 in total

Review 1.  Mathematical models of dorsal closure.

Authors:  A C Aristotelous; J M Crawford; G S Edwards; D P Kiehart; S Venakides
Journal:  Prog Biophys Mol Biol       Date:  2018-05-29       Impact factor: 3.667

Review 2.  Tension, contraction and tissue morphogenesis.

Authors:  Natalie C Heer; Adam C Martin
Journal:  Development       Date:  2017-12-01       Impact factor: 6.868

3.  Size scaling in collective cell growth.

Authors:  Rocky Diegmiller; Caroline A Doherty; Tomer Stern; Jasmin Imran Alsous; Stanislav Y Shvartsman
Journal:  Development       Date:  2021-09-13       Impact factor: 6.862

4.  Computational Systems Biology of Morphogenesis.

Authors:  Jason M Ko; Reza Mousavi; Daniel Lobo
Journal:  Methods Mol Biol       Date:  2022

5.  Automated Design of Pluripotent Stem Cell Self-Organization.

Authors:  Ashley R G Libby; Demarcus Briers; Iman Haghighi; David A Joy; Bruce R Conklin; Calin Belta; Todd C McDevitt
Journal:  Cell Syst       Date:  2019-11-20       Impact factor: 10.304

6.  Mathematical modeling of the interaction between yolk utilization and fish growth in zebrafish, Danio rerio.

Authors:  Ashley V Schwartz; Karilyn E Sant; Julian Navarrete; Uduak Z George
Journal:  Development       Date:  2021-05-07       Impact factor: 6.868

7.  Multi-scale cellular engineering: From molecules to organ-on-a-chip.

Authors:  Ngan F Huang; Ovijit Chaudhuri; Patrick Cahan; Aijun Wang; Adam J Engler; Yingxiao Wang; Sanjay Kumar; Ali Khademhosseini; Song Li
Journal:  APL Bioeng       Date:  2020-03-03

8.  Mechanical control of tissue shape and morphogenetic flows during vertebrate body axis elongation.

Authors:  Samhita P Banavar; Emmet K Carn; Payam Rowghanian; Georgina Stooke-Vaughan; Sangwoo Kim; Otger Campàs
Journal:  Sci Rep       Date:  2021-04-21       Impact factor: 4.379

Review 9.  Regenerative medicine meets mathematical modelling: developing symbiotic relationships.

Authors:  S L Waters; L J Schumacher; A J El Haj
Journal:  NPJ Regen Med       Date:  2021-04-12

10.  The transition from local to global patterns governs the differentiation of mouse blastocysts.

Authors:  Sabine C Fischer; Elena Corujo-Simon; Joaquin Lilao-Garzon; Ernst H K Stelzer; Silvia Muñoz-Descalzo
Journal:  PLoS One       Date:  2020-05-15       Impact factor: 3.240

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