| Literature DB >> 29850543 |
Lufeng Cheng1, Ruihua Yin1, Shaonan Yang1, Xudong Pan1, Aijun Ma1.
Abstract
PURPOSE: Large artery atherosclerosis (LAA) ischemic stroke (IS) is the most common IS subtype, and microemboli are clinically important for indicating an increased risk of IS. Nucleotide-binding domain-like receptor protein 3 (NLRP3) plays a crucial role in the pathogenesis of atherosclerosis. The aim of this study is to investigate the relationship between NLRP3 gene polymorphisms and susceptibility for LAA IS and microembolic signals (MES) in the Chinese Han population.Entities:
Mesh:
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Year: 2018 PMID: 29850543 PMCID: PMC5937605 DOI: 10.1155/2018/6345805
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Agarose gel electrophoresis of the rs4612666 polymorphism. Line 1: TT; line 2: CT; line 3: CC; line 4: CT; line 5: CC; line 6: CT; line 7: TT; line 8: CC.
Figure 2Agarose gel electrophoresis of the rs10754558 polymorphism. Line 1: CG; line 2: CG; line 3: CG; line 4: CG; line 5: CC; line 6: CC; line 7: CG; line 8: GG.
Figure 3Sequencing of rs7512998. A: TT; B: CT; C: CC.
Primer sequence and restriction enzyme.
| SNP | Primer sequence | Annealing temperature | Restriction enzyme | Fragment length |
|---|---|---|---|---|
| rs4612666 | F: TGCTTAAGGCCATTAATTGTG | 57 | BbsI | TT: 260 |
| rs10754558 | F: CCGGGCATGGTGGCTCA | 58 | MboI | GG: 261 |
| rs7512998 | F: GTAACCACCATTCTATTTGC | 58 | Direct sequencing |
Clinical characteristics of LAA patients and control subjects.
| Variables | LAA group | Control group |
|
|---|---|---|---|
| Age (years) | 62.89 ± 12.58 | 61.27 ± 10.32 | 0.097 |
| Sex (man,%) | 219 (74.7%) | 150 (56.6%) | <0.001 |
| Hypertension ( | 200 (68.3%) | 122 (46.0%) | <0.001 |
| Diabetes ( | 86 (29.4%) | 46 (17.4%) | 0.001 |
| CAD ( | 68 (23.2%) | 65 (24.5%) | 0.715 |
| Smoking ( | 143 (48.8%) | 54 (20.4%) | <0.001 |
| Drinking ( | 121 (41.3%) | 56 (21.1%) | <0.001 |
| Family history of cerebro-cardiovascular events ( | 61 (20.8%) | 19 (7.2%) | <0.001 |
| BMI (kg/m2) | 23.98 ± 3.96 | 23.87 ± 3.73 | 0.727 |
| TG (mmol/L) | 1.56 ± 0.89 | 1.79 ± 1.09 | 0.008 |
| TC (mmol/L) | 4.46 ± 1.14 | 4.80 ± 0.98 | <0.001 |
| HDL (mmol/L) | 1.05 ± 2.33 | 1.24 ± 0.49 | <0.001 |
| LDL (mmol/L) | 2.70 ± 0.87 | 2.60 ± 0.69 | 0.135 |
| hs-CRP (mmol/L) | 7.58 ± 9.46 | 2.33 ± 2.04 | <0.001 |
| GLU (mmol/L) | 6.27 ± 2.51 | 5.46 ± 1.50 | <0.001 |
CAD: coronary artery disease; BMI: body mass index; TG: triglycerides; TC: total cholesterol; HDL: high-density lipoprotein; LDL: low-density lipoprotein; Hs-CRP: high-sensitivity C-reactive protein; GLU: fasting blood-glucose.
Genotype and allelic frequencies of NLRP3 SNPs in LAA patients and control subjects.
| SNP site | LAA group (%) | Control group (%) |
| Adjusted OR | 95% CI |
|---|---|---|---|---|---|
| rs4612666 | |||||
| genotype | |||||
| CC | 63 (21.5%) | 93 (35.1%) | - | 1 | |
| CT | 163 (55.6%) | 129 (48.7%) | 0.090 | 1.531 | 0.935–2.505 |
| TT | 67 (22.9%) | 43 (16.2%) | 0.001 | 3.021 | 1.593–5.731 |
| allele | |||||
| C | 289 (49.3%) | 315 (59.4%) | - | 1 | |
| T | 297 (50.7%) | 215 (40.6%) | 0.001 | 1.506 | 1.188–1.909 |
| rs10754558 | |||||
| genotype | |||||
| CC | 73 (24.9%) | 71 (26.8%) | - | 1 | |
| CG | 154 (52.6%) | 131 (49.4%) | 0.650 | 1.127 | 0.672–1.889 |
| GG | 66 (22.5%) | 63 (23.8%) | 0.538 | 1.184 | 0.648–2.163 |
| Allele | |||||
| C | 300 (51.2%) | 273 (51.5%) | - | 1 | |
| G | 286 (48.8) | 258 (48.5%) | 0.916 | 1.013 | 0.801–1.281 |
| rs7512998 | |||||
| genotype | |||||
| CC | 2 (0.7%) | 3 (1.1%) | - | 1 | |
| CT | 45 (15.4%) | 56 (21.1%) | 0.492 | 2.275 | 0.218–23.768 |
| TT | 246 (84.0%) | 206 (77.7%) | 0.278 | 3.584 | 0.358–35.896 |
| allele | |||||
| C | 49 (8.4%) | 62 (11.7%) | - | 1 | |
| T | 537 (91.6%) | 468 (88.3%) | 0.063 | 1.452 | 0.978–2.154 |
Clinical characteristics of MES(+) and MES(−) groups.
| variables | MES(+) | MES(−) |
|
|---|---|---|---|
| Age (years) | 63.79 ± 12.81 | 62.58 ± 12.51 | 0.470 |
| Sex (man, %) | 55 (72.4%) | 164 (75.6%) | 0.580 |
| Hypertension ( | 46 (60.5%) | 154 (71.0%) | 0.092 |
| Diabetes ( | 21 (27.6%) | 65 (30.0%) | 0.702 |
| CAD ( | 18 (23.7%) | 50 (23.0%) | 0.909 |
| Smoking ( | 36 (47.4%) | 107 (49.3%) | 0.771 |
| Drinking ( | 27 (35.5%) | 94 (43.3%) | 0.235 |
| Family history of cerebrocardiovascular events ( | 16 (21.1%) | 45 (20.7%) | 0.954 |
| BMI (kg/m2) | 24.32 ± 3.95 | 23.87 ± 3.96 | 0.387 |
| TG (mmol/l) | 1.45 ± 0.56 | 1.60 ± 0.98 | 0.102 |
| TC (mmol/l) | 4.53 ± 0.98 | 4.44 ± 1.19 | 0.551 |
| HDL (mmol/L) | 1.04 ± 0.25 | 1.05 ± 0.23 | 0.644 |
| LDL (mmol/L) | 2.75 ± 0.74 | 2.68 ± 0.91 | 0.560 |
| hs-CRP (mmol/L) | 7.51 ± 10.22 | 7.60 ± 9.20 | 0.946 |
| GLU (mmol/L) | 6.19 ± 2.70 | 6.30 ± 2.45 | 0.746 |
Genotypes and allelic frequencies of NLRP3 SNPs in MES(+) and MES(−) groups.
| SNP site | MES(+) | MES(−) |
| OR | 95% CI |
|---|---|---|---|---|---|
| rs4612666 | |||||
| genotype | |||||
| CC | 12 (15.8%) | 51 (23.5%) | - | 1 | |
| CT | 38 (50.0%) | 125 (57.6%) | 0.464 | 1.314 | 0.633–2.730 |
| TT | 26 (34.2%) | 41 (18.9%) | 0.015 | 2.706 | 1.210–6.048 |
| allele | |||||
| C | 62 (40.8%) | 227 (52.3%) | - | 1 | |
| T | 90 (59.2%) | 207 (47.7%) | 0.015 | 1.593 | 1.095–2.315 |
| rs10754558 | |||||
| genotype | |||||
| CC | 18 (23.7%) | 55 (25.3%) | - | 1 | |
| CG | 42 (55.3%) | 112 (51.6%) | 0.624 | 1.175 | 0.617–2.237 |
| GG | 16 (21.1%) | 50 (23.0%) | 0.841 | 1.084 | 0.494–2.378 |
| allele | |||||
| C | 78 (51.3%) | 222 (51.2%) | - | 1 | |
| G | 74 (48.7%) | 212 (48.8%) | 0.972 | 0.993 | 0.687–1.438 |
| rs7512998 | |||||
| genotype | |||||
| CC | 1 (1.3%) | 1 (0.5%) | - | 1 | |
| CT | 15 (19.75%) | 30 (13.8%) | 0.521 | 0.388 | 0.022–6.999 |
| TT | 60 (78.95%) | 186 (85.7%) | 0.318 | 0.234 | 0.014–4.047 |
| allele | |||||
| C | 17 (11.2%) | 32 (0.074) | - | 1 | |
| T | 135 (88.8%) | 402 (0.926) | 0.144 | 0.632 | 0.340–1.175 |
Figure 4Linkage disequilibrium tests of rs4612666-rs10754558-rs7512998: the D′ value between rs4612666 and rs7512998 is 0.63, the D″ value between rs10754558 and rs7512998 is 0.47, and the D′ value between rs4612666 and rs7512998 is 0.17.
Haplotype analysis of rs4612666-rs10754558-rs7512998 in LAA patients and control subjects.
| haplotype | LAA group (freq) | Control group (freq) |
| OR | 95% CI |
|---|---|---|---|---|---|
| C C C | 26.52 (0.045) | 44.38 (0.084) | 0.009 | 0.521 | 0.317–0.856 |
| C C T | 98.42 (0.168) | 95.45 (0.180) | 0.620 | 0.924 | 0.677–1.262 |
| C G C | 7.81 (0.013) | 15.02 (0.028) | - | - | - |
| C G T | 156.24 (0.267) | 160.15 (0.302) | 0.205 | 0.844 | 0.649–1.097 |
| T C C | 11.15 (0.019) | 0.08 (0.000) | - | - | - |
| T C T | 163.91 (0.280) | 133.09 (0.251) | 0.254 | 1.169 | 0.894–1.529 |
| T G C | 3.52 (0.006) | 2.51 (0.005) | - | - | - |
| T G T | 118.42 (0.202) | 79.31 (0.150) | 0.019 | 1.453 | 1.062–1.988 |
All those frequencies < 0.03 were ignored in analysis.