| Literature DB >> 29850075 |
Abstract
A new mononuclear tetra-hedral CoII complex, di-chlorido-bis-(imidazo[1,2-a]pyridine-κN1)cobalt(II), [CoCl2(C7H6N2)2], has been synthesized using a bioactive imidazo-pyridine ligand. X-ray crystallography reveals that the solid-state structure of the title complex exhibits both C-H⋯Cl and π-π stacking inter-actions in building supra-molecular assemblies. Indeed, the mol-ecules are linked by C-H⋯Cl inter-actions into a two-dimensional framework, with finite zero-dimensional dimeric units as building blocks, whereas π-π stacking plays a crucial role in building a supra-molecular layered network. An exhaustive investigation of the diverse inter-molecular inter-actions via Hirshfeld surface analysis enables contributions to the crystal packing of the title complex to be qu-anti-fied. The fingerprint plots associated with the Hirshfeld surface clearly display each significant inter-action involved in the structure, by qu-anti-fying them in an effective visual manner.Entities:
Keywords: CoII complex with imidazopyridine; Hirshfeld surface; crystal structure; fingerprint plot; noncovalent interactions; supramolecular assembly
Year: 2018 PMID: 29850075 PMCID: PMC5947470 DOI: 10.1107/S2056989018003857
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1ORTEP view with atom-numbering scheme of the title complex with displacement ellipsoids drawn at the 30% probability level. The unlabeled counterpart is generated by the symmetry operation −x + , y, −z + .
Selected geometric parameters (Å, °)
| Co1—N1 | 2.0168 (4) | Co1—Cl1 | 2.2556 (5) |
| N1—Co1—N1i | 107.70 (5) | N1i—Co1—Cl1 | 112.44 (5) |
| N1—Co1—Cl1 | 106.83 (1) | Cl1—Co1—Cl1i | 110.64 (4) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5⋯Cl1ii | 0.93 | 2.89 | 3.663 (1) | 141 |
| C7—H7⋯Cl1iii | 0.93 | 2.88 | 3.734 (1) | 153 |
Symmetry codes: (ii) ; (iii) .
Geometrical parameters (Å, °) for π–π stacking
(a) Cg1 and Cg2 are the centroids of the (N1/C1/N2/C6/C7) and (N2/C1–C5) rings, respectively; (b) centroid–centroid distance between ring i and ring j; (c) vertical distance from ring centroid i to ring j; (d) vertical distance from ring centroid j to ring i; (e) dihedral angle between the first ring mean plane and the second ring mean plane of the partner molecule; (f) angle between the centroid of the first ring and the second ring; (g) angle between the centroid of the first ring and the normal to the mean plane of the second ring of the partner molecule.
| Rings |
|
|
| α | β | γ | Slippage |
|---|---|---|---|---|---|---|---|
|
| 3.6414 (16) | −3.4980 (8) | −3.4980 (8) | 0.0 | 16.13 | 16.13 | 1.012 |
|
| 3.9583 (16) | −3.5303 (9) | −3.5035 (9) | 2.47 | 27.73 | 26.89 | – |
|
| 3.8371 (16) | 3.4625 (9) | 3.4846 (9) | 2.47 | 24.75 | 25.53 | – |
|
| 3.5293 (16) | 3.4671 (9) | 3.4671 (9) | 0.0 | 10.77 | 10.77 | 0.659 |
Symmetry codes: (ii) −x, −y, −z + 1; (iv) −x + 1, −y, −z + 1.
Figure 2Formation of a two-dimensional supramolecular network generated through self-complementary C—H⋯Cl interactions.
Figure 3Monomeric units linked through multi π–π stacking interactions leading to the formation of a supramolecular layered assembly. Color codes: the green and yellow dotted lines denote π–π stacking interactions between two pyridine rings and two imidazo rings, respectively, whereas π–π stacking interactions between pyridine and imidazo rings are represented by pink dotted lines.
Figure 4Hirshfeld surfaces of the title complex mapped with (a) d norm, (b) d e, (c) shape-index and (d) curvedness.
Percentage contributions of interatomic contacts to the Hirshfeld surface
| Contact | % contribution | Contact | % contribution |
|---|---|---|---|
| Cl⋯H/H⋯Cl | 30.0 | Cl⋯Cl | 0.4 |
| N⋯H/H⋯N | 4.1 | N⋯N | 0.9 |
| C⋯H/H⋯C | 12.1 | C⋯C | 7.9 |
| Cl⋯C/C⋯Cl | 0.5 | H⋯H | 38.4 |
| N⋯C/C⋯N | 5.7 |
Figure 5Fingerprint plots: full (middle) and decomposed plots corresponding to all contacts involved in the structure [clockwise: from bottom left to bottom right]. The relative contributions of various intermolecular contacts to the Hirshfeld surface area of the title structure are displayed by the schematic illustration.
Summary of the short interatomic contacts (Å)
| Contact | Distance | Contact | Distance |
|---|---|---|---|
| Cl1⋯H7v | 2.883 | C2⋯H6v | 2.992 |
| Cl1⋯C2i | 3.613 (2) | C2⋯C5iv | 3.535 (3) |
| Cl1⋯H2i | 2.932 | C2⋯H3vii | 3.021 |
| Cl1⋯H5ii | 2.893 | C4⋯C4viii | 3.525 (3) |
| Cl1⋯H3vi | 3.055 | C4⋯H4viii | 2.834 |
| N1⋯N1i | 3.257 (2) | C6⋯H2iii | 3.050 |
| C1⋯C4iv | 3.482 (3) | H2⋯H3vii | 2.416 |
| C1⋯C5iv | 3.516 (3) | H4⋯H4viii | 2.309 |
| C1⋯C6ii | 3.518 (3) | H6⋯H2iii | 2.535 |
Symmetry codes: (i) −x + , y, −z + ; (ii) −x, −y, −z + 1; (iii) x, y − 1, z; (iv) −x + 1, −y, −z + 1; (v) x, y + 1, z; (vi) x − , −y + 1, z + ; (vii) −x + 1, −y + 1, −z + 1; (viii) −x + , y, −z + ;
Figure 6Perspective view of the decomposed d norm surfaces of the title structure corresponding to (a) Cl⋯H/H⋯Cl; (b) N⋯H/H⋯N; (c) C⋯H/H⋯C; (d) Cl⋯C/C⋯Cl; (e) N⋯C/C⋯N; (f) Cl⋯Cl; (g) N⋯N; (h) C⋯C and (i) H⋯H contacts.
Experimental details
| Crystal data | |
| Chemical formula | [CoCl2(C7H6N2)2] |
|
| 366.11 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 7.712 (2), 6.7898 (18), 14.348 (4) |
| β (°) | 98.533 (5) |
|
| 743.0 (4) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.51 |
| Crystal size (mm) | 0.17 × 0.11 × 0.06 |
| Data collection | |
| Diffractometer | Bruker |
| Absorption correction | Multi-scan ( |
|
| 0.82, 0.92 |
| No. of measured, independent and observed [ | 6663, 1307, 1241 |
|
| 0.023 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.024, 0.064, 1.06 |
| No. of reflections | 1307 |
| No. of parameters | 96 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.18, −0.32 |
Computer programs: APEX2 , SAINT and XPREP (Bruker, 2007 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸), Mercury (Macrae et al., 2006 ▸) and PLATON (Spek, 2009 ▸).
| [CoCl2(C7H6N2)2] | |
| Monoclinic, | Mo |
| Cell parameters from 647 reflections | |
| θ = 1.5–25.0° | |
| µ = 1.51 mm−1 | |
| β = 98.533 (5)° | |
| Block, pink | |
| 0.17 × 0.11 × 0.06 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 1307 independent reflections |
| Radiation source: fine-focus sealed tube | 1241 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 25.0°, θmin = 2.8° |
| Absorption correction: multi-scan (SADABS; Bruker, 2007) | |
| 6663 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1307 reflections | (Δ/σ)max < 0.001 |
| 96 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Co1 | 0.250000 | 0.21247 (5) | 0.750000 | 0.03788 (13) | |
| Cl1 | 0.00699 (6) | 0.40150 (8) | 0.73557 (4) | 0.05261 (16) | |
| N1 | 0.2270 (2) | 0.0373 (2) | 0.63532 (10) | 0.0410 (3) | |
| N2 | 0.2373 (2) | −0.0539 (2) | 0.48712 (11) | 0.0452 (4) | |
| C2 | 0.3250 (3) | 0.2781 (3) | 0.52292 (15) | 0.0513 (5) | |
| H2 | 0.341071 | 0.383348 | 0.564797 | 0.062* | |
| C1 | 0.2664 (2) | 0.0958 (3) | 0.55145 (12) | 0.0386 (4) | |
| C6 | 0.1741 (3) | −0.2106 (3) | 0.53192 (17) | 0.0554 (5) | |
| H6 | 0.141218 | −0.332623 | 0.505604 | 0.066* | |
| C5 | 0.2770 (3) | −0.0324 (4) | 0.39615 (14) | 0.0635 (6) | |
| H5 | 0.261300 | −0.136802 | 0.353786 | 0.076* | |
| C7 | 0.1689 (3) | −0.1537 (3) | 0.62194 (16) | 0.0503 (5) | |
| H7 | 0.131285 | −0.232355 | 0.668094 | 0.060* | |
| C3 | 0.3582 (3) | 0.2988 (4) | 0.43289 (15) | 0.0629 (6) | |
| H3 | 0.394972 | 0.419967 | 0.412794 | 0.075* | |
| C4 | 0.3379 (3) | 0.1406 (5) | 0.37060 (15) | 0.0677 (7) | |
| H4 | 0.367003 | 0.155512 | 0.310375 | 0.081* |
| Co1 | 0.0447 (2) | 0.0343 (2) | 0.0365 (2) | 0.000 | 0.01225 (14) | 0.000 |
| Cl1 | 0.0507 (3) | 0.0496 (3) | 0.0578 (3) | 0.0098 (2) | 0.0093 (2) | 0.0003 (2) |
| N1 | 0.0469 (8) | 0.0342 (8) | 0.0436 (8) | −0.0029 (6) | 0.0121 (7) | −0.0024 (6) |
| N2 | 0.0415 (8) | 0.0476 (9) | 0.0451 (9) | 0.0027 (7) | 0.0022 (7) | −0.0107 (7) |
| C2 | 0.0594 (12) | 0.0493 (11) | 0.0442 (11) | −0.0098 (9) | 0.0045 (9) | 0.0033 (9) |
| C1 | 0.0383 (9) | 0.0406 (10) | 0.0367 (9) | 0.0018 (7) | 0.0049 (7) | −0.0037 (7) |
| C6 | 0.0561 (12) | 0.0403 (11) | 0.0677 (14) | −0.0017 (9) | 0.0023 (10) | −0.0165 (9) |
| C5 | 0.0534 (12) | 0.0963 (18) | 0.0387 (11) | 0.0085 (13) | −0.0003 (9) | −0.0252 (12) |
| C7 | 0.0520 (11) | 0.0353 (9) | 0.0644 (12) | −0.0050 (9) | 0.0109 (9) | 0.0038 (9) |
| C3 | 0.0607 (13) | 0.0808 (16) | 0.0454 (11) | −0.0161 (12) | 0.0019 (10) | 0.0154 (11) |
| C4 | 0.0540 (13) | 0.111 (2) | 0.0381 (11) | −0.0105 (14) | 0.0054 (9) | 0.0056 (13) |
| Co1—N1 | 2.0168 (4) | C2—C1 | 1.400 (3) |
| Co1—N1i | 2.0169 (15) | C2—H2 | 0.9300 |
| Co1—Cl1 | 2.2556 (5) | C6—C7 | 1.355 (3) |
| Co1—Cl1i | 2.2556 (7) | C6—H6 | 0.9300 |
| N1—C1 | 1.344 (2) | C5—C4 | 1.337 (4) |
| N1—C7 | 1.376 (2) | C5—H5 | 0.9300 |
| N2—C1 | 1.369 (2) | C7—H7 | 0.9300 |
| N2—C6 | 1.370 (3) | C3—C4 | 1.391 (4) |
| N2—C5 | 1.392 (3) | C3—H3 | 0.9300 |
| C2—C3 | 1.361 (3) | C4—H4 | 0.9300 |
| N1—Co1—N1i | 107.70 (5) | N2—C1—C2 | 119.15 (17) |
| N1—Co1—Cl1 | 106.83 (1) | C7—C6—N2 | 106.79 (17) |
| N1i—Co1—Cl1 | 112.44 (5) | C7—C6—H6 | 126.6 |
| N1—Co1—Cl1i | 112.44 (5) | N2—C6—H6 | 126.6 |
| N1i—Co1—Cl1i | 106.83 (5) | C4—C5—N2 | 119.0 (2) |
| Cl1—Co1—Cl1i | 110.64 (4) | C4—C5—H5 | 120.5 |
| C1—N1—C7 | 105.44 (16) | N2—C5—H5 | 120.5 |
| C1—N1—Co1 | 123.48 (12) | C6—C7—N1 | 110.28 (19) |
| C7—N1—Co1 | 131.06 (14) | C6—C7—H7 | 124.9 |
| C1—N2—C6 | 107.13 (16) | N1—C7—H7 | 124.9 |
| C1—N2—C5 | 121.17 (19) | C2—C3—C4 | 120.7 (2) |
| C6—N2—C5 | 131.65 (19) | C2—C3—H3 | 119.6 |
| C3—C2—C1 | 118.9 (2) | C4—C3—H3 | 119.6 |
| C3—C2—H2 | 120.5 | C5—C4—C3 | 120.9 (2) |
| C1—C2—H2 | 120.5 | C5—C4—H4 | 119.6 |
| N1—C1—N2 | 110.35 (16) | C3—C4—H4 | 119.6 |
| N1—C1—C2 | 130.48 (17) | ||
| N1i—Co1—N1—C1 | −157.31 (17) | C5—N2—C1—C2 | 4.7 (3) |
| Cl1i—Co1—N1—C1 | −39.88 (15) | C3—C2—C1—N1 | 179.1 (2) |
| Cl1—Co1—N1—C1 | 81.68 (14) | C3—C2—C1—N2 | −2.6 (3) |
| N1i—Co1—N1—C7 | 24.35 (15) | C1—N2—C6—C7 | −0.9 (2) |
| Cl1i—Co1—N1—C7 | 141.78 (16) | C5—N2—C6—C7 | 176.8 (2) |
| Cl1—Co1—N1—C7 | −96.66 (17) | C1—N2—C5—C4 | −2.7 (3) |
| C7—N1—C1—N2 | −1.1 (2) | C6—N2—C5—C4 | 180.0 (2) |
| Co1—N1—C1—N2 | −179.77 (11) | N2—C6—C7—N1 | 0.2 (2) |
| C7—N1—C1—C2 | 177.4 (2) | C1—N1—C7—C6 | 0.5 (2) |
| Co1—N1—C1—C2 | −1.3 (3) | Co1—N1—C7—C6 | 179.08 (14) |
| C6—N2—C1—N1 | 1.2 (2) | C1—C2—C3—C4 | −1.3 (3) |
| C5—N2—C1—N1 | −176.69 (16) | N2—C5—C4—C3 | −1.3 (3) |
| C6—N2—C1—C2 | −177.42 (18) | C2—C3—C4—C5 | 3.4 (4) |
| H··· | ||||
| C5—H5···Cl1ii | 0.93 | 2.89 | 3.663 (1) | 141 |
| C7—H7···Cl1iii | 0.93 | 2.88 | 3.734 (1) | 153 |