| Literature DB >> 29850050 |
Akbar Ali1, Julio Zukerman-Schpector2, Márcio Weber Paixão1, Mukesh M Jotani3, Edward R T Tiekink4.
Abstract
In the title indole derivative, C17H15NO4S, the fused dioxolo-indole system is essentially planar [r.m.s. deviation of the 12 fitted atoms = 0.0249 Å] and is effectively perpendicular to the appended 4-tolyl ring, forming a dihedral angle of 89.95 (6)°. Overall, the mol-ecule has the shape of the letter L. In the crystal, supra-molecular layers in the ab plane are formed via weak 4-tolyl-C-H⋯π(C6-ring of indole) and S-O⋯π(1,3-dioxole) contacts. The aforementioned inter-actions along with inter-atomic H⋯H and H⋯O contacts are all shown to make significant contributions to the calculated Hirshfeld surfaces.Entities:
Keywords: 1,3-dioxole; Hirshfeld surface analysis; crystal structure; indole
Year: 2018 PMID: 29850050 PMCID: PMC5956333 DOI: 10.1107/S2056989018000889
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the (O1,O2,C1,C2,C9) and (C2–C4,C7–C9) rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C11—H11⋯ | 0.93 | 2.88 | 3.662 (2) | 142 |
| S—O3⋯ | 1.42 (1) | 3.77 (1) | 4.9921 (12) | 144 (1) |
| S—O4⋯ | 1.43 (1) | 3.86 (1) | 4.9243 (12) | 132 (1) |
Symmetry codes: (i) ; (ii) .
Figure 2Molecular packing in (I): (a) view of the supramolecular layer in the ab plane and (b) the unit-cell contents shown in projection down the a axis; one layer is highlighted in space-filling mode. The C—H⋯π and S—O⋯π contacts are shown as purple and orange dashed lines, respectively.
Summary of short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| H8⋯H16 | 2.23 |
|
| H14⋯H16 | 2.33 |
|
| O1⋯H8 | 2.61 | 1 − |
| O1⋯H16 | 2.54 | − |
| O2⋯H16 | 2.62 |
|
| O3⋯H1 | 2.63 |
|
| C4⋯H12 | 2.84 | 1 − |
| C9⋯H6 | 2.78 |
|
| C9⋯H11 | 2.86 | 1 − |
Figure 3Two views of the Hirshfeld surface mapped over d norm for (I) in the range −0.039 to +1.643 au.
Figure 4Two views of the Hirshfeld surface mapped over the electrostatic potential for (I) in the range ±0.075 au.
Figure 5Two views of the Hirshfeld surface about reference molecule of (I) mapped with the shape-index property highlighting (a) H⋯H, O⋯H/H⋯O and C⋯H/H⋯C contacts by sky-blue, red and yellow dashed lines, respectively, and (b) C—H⋯π/π⋯H—C contacts by red dashed, S—O⋯π and its reciprocal, i.e. π⋯O—S, contacts by black and white dashed lines, respectively.
Figure 6(a) The full two-dimensional fingerprint plot and fingerprint plots delineated into (b) H⋯H, (c) O⋯H/H⋯O and (d) C⋯H/H⋯C contacts for (I).
Percentage contributions of interatomic contacts to the Hirshfeld surface for (I)
| Contact | Percentage contribution |
|---|---|
| H⋯H | 35.1 |
| O⋯H/H⋯O | 31.1 |
| C⋯H/H⋯C | 28.6 |
| N⋯H/H⋯N | 2.4 |
| C⋯C | 1.7 |
| C⋯O/O⋯C | 0.7 |
| O⋯O | 0.4 |
Experimental details
| Crystal data | |
| Chemical formula | C17H15NO4S |
|
| 329.36 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 290 |
|
| 15.2673 (13), 12.5337 (9), 17.6096 (15) |
| β (°) | 112.628 (3) |
|
| 3110.3 (4) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.23 |
| Crystal size (mm) | 0.35 × 0.28 × 0.17 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.709, 0.745 |
| No. of measured, independent and observed [ | 27617, 3198, 2784 |
|
| 0.028 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.041, 0.125, 1.07 |
| No. of reflections | 3198 |
| No. of parameters | 210 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.26, −0.27 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SIR2014 (Burla et al., 2015 ▸), SHELXL2014/6 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸), MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸).
| C17H15NO4S | |
| Monoclinic, | Mo |
| Cell parameters from 9928 reflections | |
| θ = 2.2–26.4° | |
| µ = 0.23 mm−1 | |
| β = 112.628 (3)° | |
| Irregular, colourless | |
| 0.35 × 0.28 × 0.17 mm |
| Bruker APEXII CCD diffractometer | 2784 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | θmax = 26.4°, θmin = 2.2° |
| 27617 measured reflections | |
| 3198 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3198 reflections | Δρmax = 0.26 e Å−3 |
| 210 parameters | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.63451 (17) | −0.0477 (2) | 0.44548 (14) | 0.0694 (7) | |
| H1B | 0.5872 | −0.0417 | 0.4695 | 0.083* | |
| H1A | 0.6615 | −0.1188 | 0.4565 | 0.083* | |
| C2 | 0.71138 (13) | 0.08717 (16) | 0.41601 (11) | 0.0460 (4) | |
| C3 | 0.77317 (13) | 0.16699 (16) | 0.41880 (11) | 0.0471 (4) | |
| H3 | 0.8199 | 0.1899 | 0.4679 | 0.057* | |
| C4 | 0.76150 (11) | 0.21227 (14) | 0.34255 (11) | 0.0398 (4) | |
| C5 | 0.81363 (13) | 0.29544 (15) | 0.32141 (12) | 0.0474 (4) | |
| C6 | 0.77434 (14) | 0.30697 (15) | 0.23940 (13) | 0.0511 (5) | |
| H6 | 0.7939 | 0.3563 | 0.2097 | 0.061* | |
| C7 | 0.68969 (11) | 0.17599 (13) | 0.26958 (10) | 0.0363 (4) | |
| C8 | 0.62689 (12) | 0.09373 (14) | 0.26740 (11) | 0.0399 (4) | |
| H8 | 0.5796 | 0.0698 | 0.2190 | 0.048* | |
| C9 | 0.64139 (12) | 0.05175 (14) | 0.34288 (11) | 0.0414 (4) | |
| C10 | 0.54356 (13) | 0.35424 (15) | 0.12094 (11) | 0.0450 (4) | |
| C11 | 0.46506 (13) | 0.33127 (17) | 0.13887 (12) | 0.0513 (5) | |
| H11 | 0.4494 | 0.2610 | 0.1450 | 0.062* | |
| C12 | 0.41023 (14) | 0.41411 (19) | 0.14760 (13) | 0.0585 (5) | |
| H12 | 0.3576 | 0.3989 | 0.1600 | 0.070* | |
| C13 | 0.43162 (16) | 0.51894 (19) | 0.13835 (14) | 0.0603 (5) | |
| C14 | 0.51076 (19) | 0.53963 (19) | 0.12083 (19) | 0.0789 (8) | |
| H14 | 0.5265 | 0.6100 | 0.1149 | 0.095* | |
| C15 | 0.56675 (18) | 0.45869 (18) | 0.11193 (18) | 0.0695 (7) | |
| H15 | 0.6197 | 0.4741 | 0.1000 | 0.083* | |
| C16 | 0.89722 (17) | 0.3540 (2) | 0.38141 (17) | 0.0742 (7) | |
| H16A | 0.9423 | 0.3037 | 0.4161 | 0.111* | |
| H16B | 0.8764 | 0.4002 | 0.4146 | 0.111* | |
| H16C | 0.9265 | 0.3958 | 0.3519 | 0.111* | |
| C17 | 0.3709 (2) | 0.6088 (2) | 0.1472 (2) | 0.0907 (9) | |
| H17A | 0.4101 | 0.6595 | 0.1865 | 0.136* | |
| H17B | 0.3241 | 0.5809 | 0.1658 | 0.136* | |
| H17C | 0.3400 | 0.6432 | 0.0949 | 0.136* | |
| N | 0.69912 (11) | 0.23364 (12) | 0.20445 (10) | 0.0447 (4) | |
| O1 | 0.59147 (10) | −0.03034 (12) | 0.35900 (9) | 0.0605 (4) | |
| O2 | 0.70666 (11) | 0.02948 (14) | 0.48058 (9) | 0.0708 (5) | |
| O3 | 0.56284 (12) | 0.15436 (12) | 0.09072 (9) | 0.0636 (4) | |
| O4 | 0.66542 (13) | 0.28779 (14) | 0.06197 (10) | 0.0718 (5) | |
| S | 0.61611 (4) | 0.25106 (4) | 0.11113 (3) | 0.04973 (18) |
| C1 | 0.0734 (14) | 0.0767 (15) | 0.0543 (13) | −0.0216 (12) | 0.0204 (11) | 0.0117 (11) |
| C2 | 0.0420 (9) | 0.0550 (11) | 0.0375 (9) | −0.0013 (8) | 0.0116 (7) | 0.0063 (8) |
| C3 | 0.0406 (9) | 0.0561 (11) | 0.0371 (9) | −0.0072 (8) | 0.0067 (7) | −0.0005 (8) |
| C4 | 0.0341 (8) | 0.0407 (9) | 0.0423 (9) | −0.0017 (7) | 0.0121 (7) | −0.0019 (7) |
| C5 | 0.0416 (9) | 0.0446 (10) | 0.0557 (11) | −0.0046 (8) | 0.0184 (8) | 0.0015 (8) |
| C6 | 0.0528 (11) | 0.0455 (10) | 0.0605 (12) | −0.0022 (8) | 0.0281 (9) | 0.0077 (9) |
| C7 | 0.0373 (8) | 0.0359 (8) | 0.0357 (8) | 0.0060 (6) | 0.0140 (6) | 0.0007 (7) |
| C8 | 0.0372 (8) | 0.0404 (9) | 0.0374 (9) | −0.0008 (7) | 0.0092 (7) | −0.0037 (7) |
| C9 | 0.0365 (8) | 0.0414 (9) | 0.0447 (10) | −0.0024 (7) | 0.0138 (7) | 0.0015 (7) |
| C10 | 0.0489 (10) | 0.0457 (10) | 0.0380 (9) | 0.0053 (8) | 0.0139 (7) | 0.0037 (7) |
| C11 | 0.0478 (10) | 0.0528 (11) | 0.0490 (11) | −0.0034 (8) | 0.0141 (8) | 0.0027 (9) |
| C12 | 0.0447 (10) | 0.0735 (14) | 0.0561 (12) | 0.0056 (10) | 0.0179 (9) | 0.0034 (10) |
| C13 | 0.0582 (12) | 0.0620 (13) | 0.0538 (12) | 0.0172 (10) | 0.0141 (10) | 0.0006 (10) |
| C14 | 0.0844 (17) | 0.0455 (12) | 0.114 (2) | 0.0059 (11) | 0.0467 (16) | 0.0118 (13) |
| C15 | 0.0691 (14) | 0.0508 (12) | 0.104 (2) | 0.0064 (10) | 0.0505 (14) | 0.0160 (12) |
| C16 | 0.0631 (13) | 0.0690 (15) | 0.0804 (17) | −0.0278 (12) | 0.0166 (12) | −0.0014 (12) |
| C17 | 0.0891 (19) | 0.0856 (19) | 0.091 (2) | 0.0387 (16) | 0.0270 (16) | −0.0044 (16) |
| N | 0.0482 (8) | 0.0456 (8) | 0.0419 (8) | 0.0030 (7) | 0.0191 (7) | 0.0048 (6) |
| O1 | 0.0558 (8) | 0.0645 (9) | 0.0548 (9) | −0.0203 (7) | 0.0143 (7) | 0.0108 (7) |
| O2 | 0.0675 (9) | 0.0912 (12) | 0.0436 (8) | −0.0247 (9) | 0.0102 (7) | 0.0182 (8) |
| O3 | 0.0841 (10) | 0.0512 (8) | 0.0418 (8) | 0.0043 (7) | 0.0092 (7) | −0.0097 (6) |
| O4 | 0.0925 (12) | 0.0847 (11) | 0.0534 (9) | 0.0253 (10) | 0.0450 (9) | 0.0168 (8) |
| S | 0.0639 (3) | 0.0513 (3) | 0.0347 (3) | 0.0115 (2) | 0.0198 (2) | 0.00229 (18) |
| C1—O2 | 1.417 (3) | C10—C11 | 1.382 (3) |
| C1—O1 | 1.424 (3) | C10—S | 1.7539 (19) |
| C1—H1B | 0.9700 | C11—C12 | 1.379 (3) |
| C1—H1A | 0.9700 | C11—H11 | 0.9300 |
| C2—C3 | 1.363 (3) | C12—C13 | 1.379 (3) |
| C2—O2 | 1.373 (2) | C12—H12 | 0.9300 |
| C2—C9 | 1.392 (3) | C13—C14 | 1.382 (3) |
| C3—C4 | 1.404 (3) | C13—C17 | 1.503 (3) |
| C3—H3 | 0.9300 | C14—C15 | 1.374 (3) |
| C4—C7 | 1.406 (2) | C14—H14 | 0.9300 |
| C4—C5 | 1.445 (3) | C15—H15 | 0.9300 |
| C5—C6 | 1.341 (3) | C16—H16A | 0.9600 |
| C5—C16 | 1.499 (3) | C16—H16B | 0.9600 |
| C6—N | 1.414 (2) | C16—H16C | 0.9600 |
| C6—H6 | 0.9300 | C17—H17A | 0.9600 |
| C7—C8 | 1.398 (2) | C17—H17B | 0.9600 |
| C7—N | 1.409 (2) | C17—H17C | 0.9600 |
| C8—C9 | 1.366 (2) | N—S | 1.6589 (16) |
| C8—H8 | 0.9300 | O3—S | 1.4264 (16) |
| C9—O1 | 1.374 (2) | O4—S | 1.4245 (16) |
| C10—C15 | 1.381 (3) | ||
| O2—C1—O1 | 108.90 (17) | C13—C12—C11 | 121.5 (2) |
| O2—C1—H1B | 109.9 | C13—C12—H12 | 119.2 |
| O1—C1—H1B | 109.9 | C11—C12—H12 | 119.2 |
| O2—C1—H1A | 109.9 | C12—C13—C14 | 118.2 (2) |
| O1—C1—H1A | 109.9 | C12—C13—C17 | 121.2 (2) |
| H1B—C1—H1A | 108.3 | C14—C13—C17 | 120.6 (2) |
| C3—C2—O2 | 127.80 (17) | C15—C14—C13 | 121.5 (2) |
| C3—C2—C9 | 122.80 (17) | C15—C14—H14 | 119.2 |
| O2—C2—C9 | 109.39 (16) | C13—C14—H14 | 119.2 |
| C2—C3—C4 | 115.51 (16) | C14—C15—C10 | 119.2 (2) |
| C2—C3—H3 | 122.2 | C14—C15—H15 | 120.4 |
| C4—C3—H3 | 122.2 | C10—C15—H15 | 120.4 |
| C3—C4—C7 | 120.70 (16) | C5—C16—H16A | 109.5 |
| C3—C4—C5 | 131.16 (16) | C5—C16—H16B | 109.5 |
| C7—C4—C5 | 108.13 (16) | H16A—C16—H16B | 109.5 |
| C6—C5—C4 | 107.02 (16) | C5—C16—H16C | 109.5 |
| C6—C5—C16 | 127.80 (19) | H16A—C16—H16C | 109.5 |
| C4—C5—C16 | 125.17 (19) | H16B—C16—H16C | 109.5 |
| C5—C6—N | 110.52 (17) | C13—C17—H17A | 109.5 |
| C5—C6—H6 | 124.7 | C13—C17—H17B | 109.5 |
| N—C6—H6 | 124.7 | H17A—C17—H17B | 109.5 |
| C8—C7—C4 | 123.30 (16) | C13—C17—H17C | 109.5 |
| C8—C7—N | 129.75 (15) | H17A—C17—H17C | 109.5 |
| C4—C7—N | 106.87 (15) | H17B—C17—H17C | 109.5 |
| C9—C8—C7 | 113.86 (15) | C7—N—C6 | 107.42 (15) |
| C9—C8—H8 | 123.1 | C7—N—S | 126.55 (13) |
| C7—C8—H8 | 123.1 | C6—N—S | 121.92 (13) |
| C8—C9—O1 | 126.47 (16) | C9—O1—C1 | 105.71 (15) |
| C8—C9—C2 | 123.82 (16) | C2—O2—C1 | 106.13 (16) |
| O1—C9—C2 | 109.70 (16) | O4—S—O3 | 120.32 (10) |
| C15—C10—C11 | 120.45 (19) | O4—S—N | 105.29 (10) |
| C15—C10—S | 119.21 (16) | O3—S—N | 106.38 (8) |
| C11—C10—S | 120.33 (15) | O4—S—C10 | 108.84 (9) |
| C12—C11—C10 | 119.1 (2) | O3—S—C10 | 109.32 (10) |
| C12—C11—H11 | 120.5 | N—S—C10 | 105.67 (8) |
| C10—C11—H11 | 120.5 | ||
| O2—C2—C3—C4 | −179.98 (19) | C17—C13—C14—C15 | −179.5 (3) |
| C9—C2—C3—C4 | 0.3 (3) | C13—C14—C15—C10 | −0.2 (4) |
| C2—C3—C4—C7 | 0.4 (3) | C11—C10—C15—C14 | −0.1 (4) |
| C2—C3—C4—C5 | −178.72 (19) | S—C10—C15—C14 | −179.0 (2) |
| C3—C4—C5—C6 | 178.8 (2) | C8—C7—N—C6 | −178.99 (17) |
| C7—C4—C5—C6 | −0.3 (2) | C4—C7—N—C6 | −2.23 (18) |
| C3—C4—C5—C16 | 0.3 (3) | C8—C7—N—S | 23.7 (3) |
| C7—C4—C5—C16 | −178.9 (2) | C4—C7—N—S | −159.50 (13) |
| C4—C5—C6—N | −1.1 (2) | C5—C6—N—C7 | 2.1 (2) |
| C16—C5—C6—N | 177.4 (2) | C5—C6—N—S | 160.66 (14) |
| C3—C4—C7—C8 | −0.6 (3) | C8—C9—O1—C1 | 178.0 (2) |
| C5—C4—C7—C8 | 178.63 (16) | C2—C9—O1—C1 | −1.6 (2) |
| C3—C4—C7—N | −177.66 (16) | O2—C1—O1—C9 | 3.5 (3) |
| C5—C4—C7—N | 1.60 (19) | C3—C2—O2—C1 | −176.7 (2) |
| C4—C7—C8—C9 | 0.2 (2) | C9—C2—O2—C1 | 3.0 (2) |
| N—C7—C8—C9 | 176.48 (16) | O1—C1—O2—C2 | −4.0 (3) |
| C7—C8—C9—O1 | −179.05 (17) | C7—N—S—O4 | −164.49 (15) |
| C7—C8—C9—C2 | 0.5 (3) | C6—N—S—O4 | 41.24 (17) |
| C3—C2—C9—C8 | −0.8 (3) | C7—N—S—O3 | −35.75 (17) |
| O2—C2—C9—C8 | 179.44 (18) | C6—N—S—O3 | 169.99 (15) |
| C3—C2—C9—O1 | 178.81 (18) | C7—N—S—C10 | 80.39 (16) |
| O2—C2—C9—O1 | −0.9 (2) | C6—N—S—C10 | −73.87 (16) |
| C15—C10—C11—C12 | 0.0 (3) | C15—C10—S—O4 | −24.4 (2) |
| S—C10—C11—C12 | 178.91 (15) | C11—C10—S—O4 | 156.74 (16) |
| C10—C11—C12—C13 | 0.4 (3) | C15—C10—S—O3 | −157.60 (19) |
| C11—C12—C13—C14 | −0.7 (4) | C11—C10—S—O3 | 23.51 (18) |
| C11—C12—C13—C17 | 179.4 (2) | C15—C10—S—N | 88.3 (2) |
| C12—C13—C14—C15 | 0.6 (4) | C11—C10—S—N | −90.61 (17) |
| H··· | ||||
| C11—H11··· | 0.93 | 2.88 | 3.662 (2) | 142 |
| S—O3··· | 1.42 (1) | 3.77 (1) | 4.9921 (12) | 144 (1) |
| S—O4··· | 1.43 (1) | 3.86 (1) | 4.9243 (12) | 132 (1) |