| Literature DB >> 29849984 |
Afsaneh Arefi Oskouie1, Reyhaneh Farrokhi Yekta1,2, Mostafa Rezaei Tavirani2, Masoud Soheili Kashani1,2, Fatemeh Goshadrou1.
Abstract
BACKGROUND: Alzheimer's Disease (AD) is the most prevalent cause of memory impairment in the elderly population, but the diagnosis and treatment of the disease is still challenging. Lavender aqueous extract has recently been shown to have the potential in clearing Amyloid-beta plaques from AD rat hippocampus. To elucidate the therapeutic mechanisms of lavender, serum metabolic fingerprint of Aβ-induced rat Alzheimer's models was investigated through nuclear magnetic resonance spectrometry.Entities:
Keywords: Alzheimer disease; Lavandula; Metabolomics; Serum
Year: 2018 PMID: 29849984 PMCID: PMC5960064
Source DB: PubMed Journal: Avicenna J Med Biotechnol ISSN: 2008-2835
Figure 1.3D scatter scores plots for A) PCA and B) PLS-DA models for the comparison of Alzheimer rats versus control group. As can be seen, PLS-DA model could obviously discriminate Alzheimer and control groups. Part C presents the Y observed versus Y predicted and the resulting ROC curve with AUC of 1 after 7-fold cross-validation of the PLS-DA model which confirms the model has well separated the groups.
Figure 2.3D scatter scores plots for A) PCA and B) PLS-DA models for the comparison of lavender treated rats versus Alzheimer group. Part C, shows the Yobserved versus Ypredicted and the resulting ROC curve with AUC of 1 after 7-fold cross-validation of the PLS-DA model. The groups are well separated by the model.
Metabolite markers for the Alzheimer and lavender treated rats extracted from PLS-DA model. Those metabolites which had VIP values>1.4, p-value<0.05 and fold-change>1.4 have been considered. (*p<0.05, **p<0.01, ***p<0.001)
| Alanine | bmse000282 | 1.622 | 9 | 0.0134* | 1.922 | 0.164 | 0.00005*** | |
| Glutamine | bmse000038 | 1.470 | 2.6 | 0.0008*** | 1.605 | 0.4 | 0.0094** | |
| Serine | bmse000048 | 1.910 | 0.47 | 0.0011** | 1.724 | 1.42 | 0.0002*** | |
| Valine | bmse000052 | 2.750 | 3.88 | 0.0004*** | 2.601 | 0.48 | 0.0019** | |
| isobutyrate | bmse000439 | 1.661 | 0.6 | 0.0095** | 1.423 | 1.4 | 0.0025** | |
| Carnitine | bmse000211 | 1.789 | 3.1 | 0.0005*** | 1.558 | 0.43 | 0.0035** | |
| Pantothenate | bmse000287 | 1.910 | 0.47 | 0.0011** | 1.724 | 1.4 | 0.0002*** | |
| Glucose | bmse000015 | 2.132 | 2 | 0.0001*** | 2.763 | 0.4 | 0.00003*** | |
| Asparagine | bmse000030 | 1.900 | 0.45 | 0.001** | 1.526 | 3.48 | 0.0081** | |
| Isoleucine | bmse000041 | 1.474 | 0.6 | 0.0217* | 1.424 | 1.44 | 0.0025** | |
| succinate | bmse000183 | 1.661 | 0.62 | 0.0095** | - | - | - | |
| Glycine | bmse000089 | 1.427 | 1.4 | 0.0011** | - | - | - | |
| Creatinine | bmse000155 | 1.472 | 0.6 | 0.0068** | - | - | - | |
| Pyruvate | bmse000112 | 2.060 | 0.47 | 0.0002*** | - | - | - | |
| Betaine | bmse000069 | 1.699 | 2.6 | 0.0042** | - | - | - | |
| Choline | bmse000285 | 1.472 | 0.6 | 0.0068** | - | - | - | |
| Scyllo-inositol | bmse000113 | 1.699 | 2.57 | 0.0042** | - | - | - | |
| Myo-inositol | bmse000103 | 1.427 | 1.4 | 0.0011** | - | - | - | |
| Taurine | bmse000120 | 1.655 | 1.64 | 0.0002*** | - | - | - | |
| Trimethylamine | bmse000224 | - | - | - | 1.603 | 2.44 | 0.0038** | |
| Glycolate | bmse000245 | - | - | - | 1.806 | 1.6 | 0.00002*** | |
| Methionine | bmse000044 | - | - | - | 2.172 | 1.7 | 0.0002*** | |
| Citrate | bmse000076 | - | - | - | 1.958 | 6.5 | 0.0005*** | |
| Acetate | bmse000191 | - | - | - | 2.596 | 0.48 | 0.0004*** | |
The result of pathway analysis using Metaboanalyst3, for Alzheimer’s disease and also lavender-treated groups. The pathways with p-value<0.05 and impact value of more than 0 were selected.(*p<0.05, **p<0.01, ***p<0.001)
| pantothenate and CoA metabolism | Pantothenate, Valine | 0.011* | 0.009** | 0.02 | 0.02 | |
| TCA cycle | Succinate, Pyruvate | 0.02* | - | 0.097 | - | |
| glyoxilate and dicarboxylate metabolism | Glycolate, Citrate | - | 0.01* | - | 0.333 | |
| glycine, serine and threonine metabolism, | Serine, Choline, Glycine, Betaine, Pyruvate | 1.64E-5*** | - | 0.534 | - | |
| alanine, aspartate and glutamate metabolism | Alanine, Glutamine, Pyruvate, Succinate, Asparagine | 1.05E-4*** | 0.0014** | 0.149 | 0.149 | |
| Valine, leucine and isoleucine metabolism | Valine, Pyruvate, Isoleucine | 0.006** | - | 0.333 | - | |
| cysteine and methionine metabolism | Serine, Pyruvate, Methionine | 0.038* | 0.03* | 0.044 | 0.117 | |
| aminoacyl-tRNA biosynthesis | Glutamine, Glycine, Valine, Serine, Alanine, Asparagine, Methionine | 6.22E-4*** | 2.11E-5*** | 0.137 | 0.137 | |
| Methane metabolism | Glycine, Serine | 0.004** | - | 0.4 | - | |
Figure 3.10 biomarkers levels were reversed nearly to control values after treatment with lavender extract. The Y-axis represents the relativepeak intensities in NMR spectra (*p<0.05, **p<0.01, ***p<0.001).