Literature DB >> 29845637

High-dimensional variable selection and prediction under competing risks with application to SEER-Medicare linked data.

Jiayi Hou1, Anthony Paravati2, Jue Hou3, Ronghui Xu3,4, James Murphy2.   

Abstract

Competing risk analysis considers event times due to multiple causes or of more than one event types. Commonly used regression models for such data include (1) cause-specific hazards model, which focuses on modeling one type of event while acknowledging other event types simultaneously, and (2) subdistribution hazards model, which links the covariate effects directly to the cumulative incidence function. Their use in the presence of high-dimensional predictors are largely unexplored. Motivated by an analysis using the linked SEER-Medicare database for the purposes of predicting cancer versus noncancer mortality for patients with prostate cancer, we study the accuracy of prediction and variable selection of existing machine learning methods under both models using extensive simulation experiments, including different approaches to choosing penalty parameters in each method. We then apply the optimal approaches to the analysis of the SEER-Medicare data.
Copyright © 2018 John Wiley & Sons, Ltd.

Entities:  

Keywords:  LASSO; boosting; cumulative incidence function; electronic medical record; machine learning; precision medicine

Mesh:

Year:  2018        PMID: 29845637     DOI: 10.1002/sim.7822

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  5 in total

1.  Claims-Based Approach to Predict Cause-Specific Survival in Men With Prostate Cancer.

Authors:  Paul Riviere; Christopher Tokeshi; Jiayi Hou; Vinit Nalawade; Reith Sarkar; Anthony J Paravati; Melody Schiaffino; Brent Rose; Ronghui Xu; James D Murphy
Journal:  JCO Clin Cancer Inform       Date:  2019-03

2.  Scalable Algorithms for Large Competing Risks Data.

Authors:  Eric S Kawaguchi; Jenny I Shen; Marc A Suchard; Gang Li
Journal:  J Comput Graph Stat       Date:  2020-12-11       Impact factor: 1.884

3.  Variable selection with Group LASSO approach: Application to Cox regression with frailty model.

Authors:  Jean Claude Utazirubanda; Tomas Leon; Papa Ngom
Journal:  Commun Stat Simul Comput       Date:  2018-02-28       Impact factor: 1.118

4.  Variable selection methods for predicting clinical outcomes following allogeneic hematopoietic cell transplantation.

Authors:  Chloé Pasin; Ryan H Moy; Ran Reshef; Andrew J Yates
Journal:  Sci Rep       Date:  2021-02-05       Impact factor: 4.379

5.  Regularized Weighted Nonparametric Likelihood Approach for High-Dimension Sparse Subdistribution Hazards Model for Competing Risk Data.

Authors:  Leili Tapak; Michael R Kosorok; Majid Sadeghifar; Omid Hamidi; Saeid Afshar; Hassan Doosti
Journal:  Comput Math Methods Med       Date:  2021-09-19       Impact factor: 2.238

  5 in total

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