Literature DB >> 29812930

Atomic Energies from a Convolutional Neural Network.

Xin Chen1,2, Mathias S Jørgensen2, Jun Li1, Bjørk Hammer2.   

Abstract

Understanding interactions and structural properties at the atomic level is often a prerequisite to the design of novel materials. Theoretical studies based on quantum-mechanical first-principles calculations can provide this knowledge but at an immense computational cost. In recent years, machine learning has been successful in predicting structural properties at a much lower cost. Here we propose a simplified structure descriptor with no empirical parameters, "k-Bags", together with a scalable and comprehensive machine learning framework that can deepen our understanding of atomic properties of structures. This model can readily predict structure-energy relations that can provide results close to the accuracy of ab initio methods. The model provides chemically meaningful atomic energies enabling theoretical analysis of organic and inorganic molecular structures. Utilization of the local information provided by the atomic energies significantly improves upon the stochastic steps in our evolutionary global structure optimization, resulting in a much faster global minimum search of molecules, clusters, and surfaced supported species.

Year:  2018        PMID: 29812930     DOI: 10.1021/acs.jctc.8b00149

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  7 in total

1.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

Review 2.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

3.  Quantifying Chemical Structure and Machine-Learned Atomic Energies in Amorphous and Liquid Silicon.

Authors:  Noam Bernstein; Bishal Bhattarai; Gábor Csányi; David A Drabold; Stephen R Elliott; Volker L Deringer
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-17       Impact factor: 15.336

4.  Efficient Amino Acid Conformer Search with Bayesian Optimization.

Authors:  Lincan Fang; Esko Makkonen; Milica Todorović; Patrick Rinke; Xi Chen
Journal:  J Chem Theory Comput       Date:  2021-02-12       Impact factor: 6.006

5.  Molecular Conformer Search with Low-Energy Latent Space.

Authors:  Xiaomi Guo; Lincan Fang; Yong Xu; Wenhui Duan; Patrick Rinke; Milica Todorović; Xi Chen
Journal:  J Chem Theory Comput       Date:  2022-06-13       Impact factor: 6.578

6.  Complex reaction processes in combustion unraveled by neural network-based molecular dynamics simulation.

Authors:  Jinzhe Zeng; Liqun Cao; Mingyuan Xu; Tong Zhu; John Z H Zhang
Journal:  Nat Commun       Date:  2020-11-11       Impact factor: 14.919

7.  Automatically Constructed Neural Network Potentials for Molecular Dynamics Simulation of Zinc Proteins.

Authors:  Mingyuan Xu; Tong Zhu; John Z H Zhang
Journal:  Front Chem       Date:  2021-06-18       Impact factor: 5.221

  7 in total

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