Literature DB >> 29803972

Opportunities and guidelines for discovery of orally absorbed drugs in beyond rule of 5 space.

Vasanthanathan Poongavanam1, Bradley C Doak2, Jan Kihlberg3.   

Abstract

Recent years have seen a dramatic increase in the number of drugs approved in chemical space outside of Lipinski's rule of 5, that is in what has been termed beyond rule of 5 (bRo5) space. The development of three major classes of oral drugs that treat HIV and HCV infections and the growing evidence that novel, difficult targets can be accessed has prompted research into understanding design of drugs displaying cell permeability, solubility and ultimately oral bioavailability in bRo5 space. Studies have found a consistent outer property limit for a reasonable chance of de novo designing oral bioavailability. In addition, several property-based guidelines, along with incorporation of chameleonic features, have emerged as strategies to aid design in bRo5 space. A more detailed understanding of the complex and environment dependent conformational landscape will likely be the focus of the next generation of guidelines allowing property predictions of ever more complex compounds. By pushing the boundaries of current orally designable chemical space we hope that discoveries will be made for fundamental science and also for discovery of novel therapeutics.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29803972     DOI: 10.1016/j.cbpa.2018.05.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  10 in total

Review 1.  Methods to identify and optimize small molecules interacting with RNA (SMIRNAs).

Authors:  Andrei Ursu; Simon Vézina-Dawod; Matthew D Disney
Journal:  Drug Discov Today       Date:  2019-07-26       Impact factor: 7.851

2.  Steering New Drug Discovery Campaigns: Permeability, Solubility, and Physicochemical Properties in the bRo5 Chemical Space.

Authors:  Giulia Caron; Jan Kihlberg; Gilles Goetz; Ekaterina Ratkova; Vasanthanathan Poongavanam; Giuseppe Ermondi
Journal:  ACS Med Chem Lett       Date:  2021-01-05       Impact factor: 4.345

3.  Solution Conformations Shed Light on PROTAC Cell Permeability.

Authors:  Yoseph Atilaw; Vasanthanathan Poongavanam; Caroline Svensson Nilsson; Duy Nguyen; Anja Giese; Daniel Meibom; Mate Erdelyi; Jan Kihlberg
Journal:  ACS Med Chem Lett       Date:  2020-12-25       Impact factor: 4.345

4.  Are we ready to design oral PROTACs®?

Authors:  Diego Garcia Jimenez; Matteo Rossi Sebastiano; Giulia Caron; Giuseppe Ermondi
Journal:  ADMET DMPK       Date:  2021-08-31

Review 5.  Current strategies for the design of PROTAC linkers: a critical review.

Authors:  Robert I Troup; Charlene Fallan; Matthias G J Baud
Journal:  Explor Target Antitumor Ther       Date:  2020-10-30

6.  Lipid Composition Is Critical for Accurate Membrane Permeability Prediction of Cyclic Peptides by Molecular Dynamics Simulations.

Authors:  Masatake Sugita; Takuya Fujie; Keisuke Yanagisawa; Masahito Ohue; Yutaka Akiyama
Journal:  J Chem Inf Model       Date:  2022-09-02       Impact factor: 6.162

7.  Designing Soluble PROTACs: Strategies and Preliminary Guidelines.

Authors:  Diego García Jiménez; Matteo Rossi Sebastiano; Maura Vallaro; Valentina Mileo; Daniela Pizzirani; Elisa Moretti; Giuseppe Ermondi; Giulia Caron
Journal:  J Med Chem       Date:  2022-04-25       Impact factor: 8.039

8.  Bacterial production and direct functional screening of expanded molecular libraries for discovering inhibitors of protein aggregation.

Authors:  Dafni C Delivoria; Sean Chia; Johnny Habchi; Michele Perni; Ilias Matis; Nikoletta Papaevgeniou; Martin Reczko; Niki Chondrogianni; Christopher M Dobson; Michele Vendruscolo; Georgios Skretas
Journal:  Sci Adv       Date:  2019-10-16       Impact factor: 14.136

9.  Developing degraders: principles and perspectives on design and chemical space.

Authors:  Hannah J Maple; Nat Clayden; Anne Baron; Callum Stacey; Robert Felix
Journal:  Medchemcomm       Date:  2019-08-12       Impact factor: 3.597

10.  Macrocyclic Peptides Uncover a Novel Binding Mode for Reversible Inhibitors of LSD1.

Authors:  Jie Yang; Vladimir O Talibov; Stefan Peintner; Claire Rhee; Vasanthanathan Poongavanam; Matthis Geitmann; Matteo Rossi Sebastiano; Bernd Simon; Janosch Hennig; Doreen Dobritzsch; U Helena Danielson; Jan Kihlberg
Journal:  ACS Omega       Date:  2020-02-17
  10 in total

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