Literature DB >> 29794220

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Maximilian Griesmann1,2, Yue Chang3,4, Xin Liu3,4, Yue Song3,4, Georg Haberer2, Matthew B Crook5, Benjamin Billault-Penneteau1, Dominique Lauressergues6, Jean Keller6, Leandro Imanishi7, Yuda Purwana Roswanjaya8, Wouter Kohlen8, Petar Pujic9, Kai Battenberg10, Nicole Alloisio9, Yuhu Liang3,4, Henk Hilhorst11, Marco G Salgado12, Valerie Hocher13, Hassen Gherbi13, Sergio Svistoonoff13, Jeff J Doyle14, Shixu He3,4, Yan Xu3,4, Shanyun Xu3,4, Jing Qu3,4, Qiang Gao3,15, Xiaodong Fang3,15, Yuan Fu3,4, Philippe Normand9, Alison M Berry10, Luis G Wall7, Jean-Michel Ané16,17, Katharina Pawlowski12, Xun Xu3,4, Huanming Yang3,18, Manuel Spannagl2, Klaus F X Mayer2,19, Gane Ka-Shu Wong3,20,21, Martin Parniske22, Pierre-Marc Delaux23, Shifeng Cheng24,4.   

Abstract

The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of 10 plant species covering the diversity of nodule morphotypes, bacterial symbionts, and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator NODULE INCEPTION in 10 of 13 genomes of nonnodulating species within this clade. The discovery that multiple independent losses shaped the present-day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so-far-underestimated selection pressure against this symbiosis.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 29794220     DOI: 10.1126/science.aat1743

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  78 in total

1.  The Evolutionary Aspects of Legume Nitrogen-Fixing Nodule Symbiosis.

Authors:  Defeng Shen; Ton Bisseling
Journal:  Results Probl Cell Differ       Date:  2020

2.  The Ammonium Channel NOD26 is the Evolutionary Innovation that Drives the Emergence, Consolidation, and Dissemination of Nitrogen-Fixing Symbiosis in Angiosperms.

Authors:  Romina Frare; Nicolás Ayub; Karina Alleva; Gabriela Soto
Journal:  J Mol Evol       Date:  2018-09-20       Impact factor: 2.395

3.  Duplication of Symbiotic Lysin Motif Receptors Predates the Evolution of Nitrogen-Fixing Nodule Symbiosis.

Authors:  Luuk Rutten; Kana Miyata; Yuda Purwana Roswanjaya; Rik Huisman; Fengjiao Bu; Marijke Hartog; Sidney Linders; Robin van Velzen; Arjan van Zeijl; Ton Bisseling; Wouter Kohlen; Rene Geurts
Journal:  Plant Physiol       Date:  2020-07-15       Impact factor: 8.340

Review 4.  Genetic strategies for improving crop yields.

Authors:  Julia Bailey-Serres; Jane E Parker; Elizabeth A Ainsworth; Giles E D Oldroyd; Julian I Schroeder
Journal:  Nature       Date:  2019-11-06       Impact factor: 49.962

5.  A Homeotic Mutation Changes Legume Nodule Ontogeny into Actinorhizal-Type Ontogeny.

Authors:  Defeng Shen; Ting Ting Xiao; Robin van Velzen; Olga Kulikova; Xiaoyun Gong; René Geurts; Katharina Pawlowski; Ton Bisseling
Journal:  Plant Cell       Date:  2020-04-10       Impact factor: 11.277

6.  The Medicago truncatula DREPP Protein Triggers Microtubule Fragmentation in Membrane Nanodomains during Symbiotic Infections.

Authors:  Chao Su; Marie-Luise Klein; Casandra Hernández-Reyes; Morgane Batzenschlager; Franck Anicet Ditengou; Beatrice Lace; Jean Keller; Pierre-Marc Delaux; Thomas Ott
Journal:  Plant Cell       Date:  2020-02-25       Impact factor: 11.277

7.  Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response.

Authors:  Erin L Baggs; J Grey Monroe; Anil S Thanki; Ruby O'Grady; Christian Schudoma; Wilfried Haerty; Ksenia V Krasileva
Journal:  Plant Cell       Date:  2020-05-14       Impact factor: 11.277

8.  Discovery and biosynthesis of cyclic plant peptides via autocatalytic cyclases.

Authors:  Desnor N Chigumba; Lisa S Mydy; Floris de Waal; Wenjie Li; Khadija Shafiq; Jesse W Wotring; Osama G Mohamed; Tim Mladenovic; Ashootosh Tripathi; Jonathan Z Sexton; Satria Kautsar; Marnix H Medema; Roland D Kersten
Journal:  Nat Chem Biol       Date:  2021-11-22       Impact factor: 15.040

Review 9.  Gene Expression in Nitrogen-Fixing Symbiotic Nodule Cells in Medicago truncatula and Other Nodulating Plants.

Authors:  Peter Mergaert; Attila Kereszt; Eva Kondorosi
Journal:  Plant Cell       Date:  2019-11-11       Impact factor: 11.277

Review 10.  Perception of lipo-chitooligosaccharides by the bioenergy crop Populus.

Authors:  Kevin R Cope; Thomas B Irving; Sanhita Chakraborty; Jean-Michel Ané
Journal:  Plant Signal Behav       Date:  2021-04-02
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