Literature DB >> 29791154

High-Precision Megahertz-to-Terahertz Dielectric Spectroscopy of Protein Collective Motions and Hydration Dynamics.

Ali Charkhesht, Chola K Regmi, Katie R Mitchell-Koch1, Shengfeng Cheng, Nguyen Q Vinh.   

Abstract

The low-frequency collective vibrational modes in proteins as well as the protein-water interface have been suggested as dominant factors controlling the efficiency of biochemical reactions and biological energy transport. It is thus crucial to uncover the mystery of the hydration structure and dynamics as well as their coupling to collective motions of proteins in aqueous solutions. Here, we report dielectric properties of aqueous bovine serum albumin protein solutions as a model system using an extremely sensitive dielectric spectrometer with frequencies spanning from megahertz to terahertz. The dielectric relaxation spectra reveal several polarization mechanisms at the molecular level with different time constants and dielectric strengths, reflecting the complexity of protein-water interactions. Combining the effective-medium approximation and molecular dynamics simulations, we have determined collective vibrational modes at terahertz frequencies and the number of water molecules in the tightly bound and loosely bound hydration layers. High-precision measurements of the number of hydration water molecules indicate that the dynamical influence of proteins extends beyond the first solvation layer, to around 7 Å distance from the protein surface, with the largest slowdown arising from water molecules directly hydrogen-bonded to the protein. Our results reveal critical information of protein dynamics and protein-water interfaces, which determine biochemical functions and reactivity of proteins.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 29791154     DOI: 10.1021/acs.jpcb.8b02872

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Protein Solvent Shell Structure Provides Rapid Analysis of Hydration Dynamics.

Authors:  Jayangika N Dahanayake; Elaheh Shahryari; Kirsten M Roberts; Micah E Heikes; Chandana Kasireddy; Katie R Mitchell-Koch
Journal:  J Chem Inf Model       Date:  2019-03-22       Impact factor: 4.956

2.  The origin and impact of bound water around intrinsically disordered proteins.

Authors:  Korey M Reid; Abhishek K Singh; Chowdhury R Bikash; Jessica Wei; Yftah Tal-Gan; Nguyen Q Vinh; David M Leitner
Journal:  Biophys J       Date:  2022-01-21       Impact factor: 4.033

3.  Long-range DNA-water interactions.

Authors:  Abhishek K Singh; Chengyuan Wen; Shengfeng Cheng; Nguyen Q Vinh
Journal:  Biophys J       Date:  2021-10-21       Impact factor: 4.033

4.  Probing Adaptation of Hydration and Protein Dynamics to Temperature.

Authors:  Luan C Doan; Jayangika N Dahanayake; Katie R Mitchell-Koch; Abhishek K Singh; Nguyen Q Vinh
Journal:  ACS Omega       Date:  2022-06-13

5.  Terahertz Spectroscopy Tracks Proteolysis by a Joint Analysis of Absorptance and Debye Model.

Authors:  Can Cao; Kazunori Serita; Keiko Kitagishi; Hironaru Murakami; Zhao-Hui Zhang; Masayoshi Tonouchi
Journal:  Biophys J       Date:  2020-11-13       Impact factor: 4.033

6.  How Does Solvation Layer Mobility Affect Protein Structural Dynamics?

Authors:  Jayangika N Dahanayake; Katie R Mitchell-Koch
Journal:  Front Mol Biosci       Date:  2018-07-13

7.  The Structural and Dynamical Properties of the Hydration of SNase Based on a Molecular Dynamics Simulation.

Authors:  Hangxin Liu; Shuqing Xiang; Haomiao Zhu; Li Li
Journal:  Molecules       Date:  2021-09-05       Impact factor: 4.411

Review 8.  From adaptive resolution to molecular dynamics of open systems.

Authors:  Robinson Cortes-Huerto; Matej Praprotnik; Kurt Kremer; Luigi Delle Site
Journal:  Eur Phys J B       Date:  2021-09-23       Impact factor: 1.500

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.