Literature DB >> 29790070

Genotyping single-sperm cells by universal MARSALA enables the acquisition of linkage information for combined pre-implantation genetic diagnosis and genome screening.

Haitao Wu1,2, Xiaoting Shen2, Lei Huang3,4, Yanhong Zeng2, Yumei Gao5, Lin Shao5, Baomin Lu2, Yiping Zhong2, Benyu Miao2, Yanwen Xu2, Yali Wang2, Yubin Li2, Luoxing Xiong6,7,8, Sijia Lu5, X Sunney Xie3,6,7, Canquan Zhou9.   

Abstract

PURPOSE: This paper aims to investigate the feasibility of performing pre-implantation genetic diagnosis (PGD) and pre-implantation genetic screening (PGS) simultaneously by a universal strategy without the requirement of genotyping relevant affected family members or lengthy preliminary work on linkage analysis.
METHODS: By utilizing a universal Mutated Allele Revealed by Sequencing with Aneuploidy and Linkage Analyses (MARSALA) strategy based on low depth whole genome sequencing (~3x), not involving specific primers' design nor the enrichment of SNP markers for haplotype construction. Single-sperm cells and trephectoderm cells from in vitro fertilized embryos from a couple carrying HBB mutations were genotyped. Haplotypes of paternal alleles were constructed and investigated in embryos, and the chromosome copy number profiles were simultaneously analyzed.
RESULTS: The universal MARSALA strategy allows the selection of a euploid embryo free of disease mutations for in uterus transfer and successful pregnancy. A follow-up amniocentesis was performed at 17 weeks of gestation to confirm the PGD/PGS results.
CONCLUSION: We present the first successful PGD procedure based on genotyping multiple single-sperm cells to obtain SNP linkage information. Our improved PGD/PGS procedure does not require genotyping the proband or relevant family members and therefore can be applicable to a wider population of patients when conducting PGD for monogenic disorders.

Entities:  

Keywords:  Linkage analysis; MARSALA; PGD; PGS; Single-sperm cell genotyping

Mesh:

Year:  2018        PMID: 29790070      PMCID: PMC6030017          DOI: 10.1007/s10815-018-1158-9

Source DB:  PubMed          Journal:  J Assist Reprod Genet        ISSN: 1058-0468            Impact factor:   3.412


  30 in total

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2.  Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm.

Authors:  Jianbin Wang; H Christina Fan; Barry Behr; Stephen R Quake
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Journal:  Cell       Date:  2012-03-02       Impact factor: 41.582

4.  Clinical applications of MARSALA for preimplantation genetic diagnosis of spinal muscular atrophy.

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5.  Live births after simultaneous avoidance of monogenic diseases and chromosome abnormality by next-generation sequencing with linkage analyses.

Authors:  Liying Yan; Lei Huang; Liya Xu; Jin Huang; Fei Ma; Xiaohui Zhu; Yaqiong Tang; Mingshan Liu; Ying Lian; Ping Liu; Rong Li; Sijia Lu; Fuchou Tang; Jie Qiao; X Sunney Xie
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6.  In vitro fertilization with single euploid blastocyst transfer: a randomized controlled trial.

Authors:  Eric J Forman; Kathleen H Hong; Kathleen M Ferry; Xin Tao; Deanne Taylor; Brynn Levy; Nathan R Treff; Richard T Scott
Journal:  Fertil Steril       Date:  2013-03-30       Impact factor: 7.329

7.  Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.

Authors:  Chenghang Zong; Sijia Lu; Alec R Chapman; X Sunney Xie
Journal:  Science       Date:  2012-12-21       Impact factor: 47.728

8.  Massively parallel sequencing for chromosomal abnormality testing in trophectoderm cells of human blastocysts.

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9.  Selection of single blastocysts for fresh transfer via standard morphology assessment alone and with array CGH for good prognosis IVF patients: results from a randomized pilot study.

Authors:  Zhihong Yang; Jiaen Liu; Gary S Collins; Shala A Salem; Xiaohong Liu; Sarah S Lyle; Alison C Peck; E Scott Sills; Rifaat D Salem
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10.  Karyomapping-a comprehensive means of simultaneous monogenic and cytogenetic PGD: comparison with standard approaches in real time for Marfan syndrome.

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  5 in total

1.  The clinical application of preimplantation genetic diagnosis for X-linked retinitis pigmentosa.

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Review 2.  Whole Genome Amplification in Preimplantation Genetic Testing in the Era of Massively Parallel Sequencing.

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3.  Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis.

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Journal:  BMC Med Genomics       Date:  2019-11-07       Impact factor: 3.063

4.  Using affected embryos to establish linkage phase in preimplantation genetic testing for thalassemia.

Authors:  Zhanhui Ou; Yu Deng; Yunhao Liang; Zhiheng Chen; Ling Sun
Journal:  Reprod Biol Endocrinol       Date:  2022-04-30       Impact factor: 4.982

5.  Haplotyping by linked-read sequencing (HLRS) of the genetic disease carriers for preimplantation genetic testing without a proband or relatives.

Authors:  Qing Li; Yan Mao; Shaoying Li; Hongzi Du; Wenzhi He; Jianchun He; Lingyin Kong; Jun Zhang; Bo Liang; Jianqiao Liu
Journal:  BMC Med Genomics       Date:  2020-08-20       Impact factor: 3.063

  5 in total

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