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Literature DB >> 29789748

Single-cell approaches to immune profiling.

Esther Landhuis.

Abstract

Keywords: Biological techniques; Immunology; Proteomics; Transcriptomics

Mesh：

Substances：

Year: 2018 PMID： 29789748 DOI： 10.1038/d41586-018-05214-w

Source DB: PubMed Journal: Nature ISSN： 0028-0836 Impact factor: 49.962

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10 in total

1. Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

Authors: Peggie Cheung; Francesco Vallania; Hayley C Warsinske; Michele Donato; Steven Schaffert; Sarah E Chang; Mai Dvorak; Cornelia L Dekker; Mark M Davis; Paul J Utz; Purvesh Khatri; Alex J Kuo
Journal: Cell Date: 2018-04-26 Impact factor: 41.582

2. Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

Authors: Allon M Klein; Linas Mazutis; Ilke Akartuna; Naren Tallapragada; Adrian Veres; Victor Li; Leonid Peshkin; David A Weitz; Marc W Kirschner
Journal: Cell Date: 2015-05-21 Impact factor: 41.582

3. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors: Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal: Cell Date: 2015-05-21 Impact factor: 41.582

4. High-dimensional, single-cell characterization of the brain's immune compartment.

Authors: Ben Korin; Tamar L Ben-Shaanan; Maya Schiller; Tania Dubovik; Hilla Azulay-Debby; Nadia T Boshnak; Tamar Koren; Asya Rolls
Journal: Nat Neurosci Date: 2017-07-24 Impact factor: 24.884

5. Mass cytometry analysis of immune cells in the brain.

Authors: Ben Korin; Tania Dubovik; Asya Rolls
Journal: Nat Protoc Date: 2018-01-25 Impact factor: 13.491

6. Multiplexed quantification of proteins and transcripts in single cells.

Authors: Vanessa M Peterson; Kelvin Xi Zhang; Namit Kumar; Jerelyn Wong; Lixia Li; Douglas C Wilson; Renee Moore; Terrill K McClanahan; Svetlana Sadekova; Joel A Klappenbach
Journal: Nat Biotechnol Date: 2017-08-30 Impact factor: 54.908

7. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

Authors: Sean C Bendall; Erin F Simonds; Peng Qiu; El-ad D Amir; Peter O Krutzik; Rachel Finck; Robert V Bruggner; Rachel Melamed; Angelica Trejo; Olga I Ornatsky; Robert S Balderas; Sylvia K Plevritis; Karen Sachs; Dana Pe'er; Scott D Tanner; Garry P Nolan
Journal: Science Date: 2011-05-06 Impact factor: 47.728

8. Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry.

Authors: Dmitry R Bandura; Vladimir I Baranov; Olga I Ornatsky; Alexei Antonov; Robert Kinach; Xudong Lou; Serguei Pavlov; Sergey Vorobiev; John E Dick; Scott D Tanner
Journal: Anal Chem Date: 2009-08-15 Impact factor: 6.986

9. Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding.

Authors: Payam Shahi; Samuel C Kim; John R Haliburton; Zev J Gartner; Adam R Abate
Journal: Sci Rep Date: 2017-03-14 Impact factor: 4.379

10. Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

Authors: William Stephenson; Laura T Donlin; Andrew Butler; Cristina Rozo; Bernadette Bracken; Ali Rashidfarrokhi; Susan M Goodman; Lionel B Ivashkiv; Vivian P Bykerk; Dana E Orange; Robert B Darnell; Harold P Swerdlow; Rahul Satija
Journal: Nat Commun Date: 2018-02-23 Impact factor: 14.919

10 in total

9 in total

Review 1. Pursuing Human-Relevant Gut Microbiota-Immune Interactions.

Authors: Sean P Spencer; Gabriela K Fragiadakis; Justin L Sonnenburg
Journal: Immunity Date: 2019-08-20 Impact factor: 31.745

2. Antibody-Oligonucleotide Conjugation Using a SPAAC Copper-Free Method Compatible with 10× Genomics' Single-Cell RNA-Seq.

Authors: Dominic Paul Lee; Wang Jiehao Ray; Tan Pee Mei; Shawn Hoon; Jonathan Scolnick; Gene W Yeo
Journal: Methods Mol Biol Date: 2022

Single-cell approaches to immune profiling.

1. Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

2. Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

3. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

4. High-dimensional, single-cell characterization of the brain's immune compartment.

5. Mass cytometry analysis of immune cells in the brain.

6. Multiplexed quantification of proteins and transcripts in single cells.

7. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

8. Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry.

9. Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding.

10. Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

Review 1. Pursuing Human-Relevant Gut Microbiota-Immune Interactions.

2. Antibody-Oligonucleotide Conjugation Using a SPAAC Copper-Free Method Compatible with 10× Genomics' Single-Cell RNA-Seq.

3. Inflammatory Bowel Disease Therapy: Beyond the Immunome.

Review 4. Insights into rheumatic diseases from next-generation sequencing.

5. Protocol for Creating Antibodies with Complex Fluorescence Spectra.

Review 6. NOD1-Targeted Immunonutrition Approaches: On the Way from Disease to Health.

7. Characterization of adipose depot-specific stromal cell populations by single-cell mass cytometry.

8. Artificial-cell-type aware cell-type classification in CITE-seq.

Review 9. Single-Cell Approaches to Profile the Response to Immune Checkpoint Inhibitors.