Literature DB >> 29785057

Computational redesign of enzymes for regio- and enantioselective hydroamination.

Ruifeng Li1,2,3, Hein J Wijma4, Lu Song1, Yinglu Cui1,2, Marleen Otzen4, Yu'e Tian1, Jiawei Du1,3, Tao Li1,3, Dingding Niu1, Yanchun Chen1,3, Jing Feng1,3, Jian Han1, Hao Chen1, Yong Tao1, Dick B Janssen5, Bian Wu6.   

Abstract

Introduction of innovative biocatalytic processes offers great promise for applications in green chemistry. However, owing to limited catalytic performance, the enzymes harvested from nature's biodiversity often need to be improved for their desired functions by time-consuming iterative rounds of laboratory evolution. Here we describe the use of structure-based computational enzyme design to convert Bacillus sp. YM55-1 aspartase, an enzyme with a very narrow substrate scope, to a set of complementary hydroamination biocatalysts. The redesigned enzymes catalyze asymmetric addition of ammonia to substituted acrylates, affording enantiopure aliphatic, polar and aromatic β-amino acids that are valuable building blocks for the synthesis of pharmaceuticals and bioactive compounds. Without a requirement for further optimization by laboratory evolution, the redesigned enzymes exhibit substrate tolerance up to a concentration of 300 g/L, conversion up to 99%, β-regioselectivity >99% and product enantiomeric excess >99%. The results highlight the use of computational design to rapidly adapt an enzyme to industrially viable reactions.

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Year:  2018        PMID: 29785057     DOI: 10.1038/s41589-018-0053-0

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  15 in total

1.  Crystal Structure of the Ergothioneine Sulfoxide Synthase from Candidatus Chloracidobacterium thermophilum and Structure-Guided Engineering To Modulate Its Substrate Selectivity.

Authors:  Nathchar Naowarojna; Seema Irani; Weiyao Hu; Ronghai Cheng; Li Zhang; Xinhao Li; Jiesheng Chen; Yan Jessie Zhang; Pinghua Liu
Journal:  ACS Catal       Date:  2019-07-02       Impact factor: 13.084

Review 2.  Engineering ribose-5-phosphate isomerase B from a central carbon metabolic enzyme to a promising sugar biocatalyst.

Authors:  Hengtao Tang; Xin Ju; Jing Zhao; Liangzhi Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-04       Impact factor: 4.813

3.  Semi-rational design of L-amino acid deaminase for production of pyruvate and D-alanine by Escherichia coli whole-cell biocatalyst.

Authors:  Ke Liu; Haoran Yu; Guoyun Sun; Yanfeng Liu; Jianghua Li; Guocheng Du; Xueqin Lv; Long Liu
Journal:  Amino Acids       Date:  2021-08-21       Impact factor: 3.520

4.  Using molecular dynamics simulations to evaluate active designs of cephradine hydrolase by molecular mechanics/Poisson-Boltzmann surface area and molecular mechanics/generalized Born surface area methods.

Authors:  Jing Xue; Xiaoqiang Huang; Yushan Zhu
Journal:  RSC Adv       Date:  2019-05-07       Impact factor: 3.361

5.  Structure-function investigation of 3-methylaspartate ammonia lyase reveals substrate molecular determinants for the deamination reaction.

Authors:  Veronica Saez-Jimenez; Željka Sanader Maršić; Matteo Lambrughi; Jae Ho Shin; Robin van Havere; Elena Papaleo; Lisbeth Olsson; Valeria Mapelli
Journal:  PLoS One       Date:  2020-05-21       Impact factor: 3.240

6.  2-Hydroxysorangiadenosine: Structure and Biosynthesis of a Myxobacterial Sesquiterpene-Nucleoside.

Authors:  Dorothy A Okoth; Joachim J Hug; Ronald Garcia; Cathrin Spröer; Jörg Overmann; Rolf Müller
Journal:  Molecules       Date:  2020-06-09       Impact factor: 4.411

Review 7.  Recent Applications of Carbon-Nitrogen Lyases in Asymmetric Synthesis of Noncanonical Amino Acids and Heterocyclic Compounds.

Authors:  Jielin Zhang; Mohammad Z Abidin; Thangavelu Saravanan; Gerrit J Poelarends
Journal:  Chembiochem       Date:  2020-06-08       Impact factor: 3.164

8.  Concerns with computational protein engineering programmes IPRO and OptMAVEn and metabolic pathway engineering programme optStoic.

Authors:  Thomas K Wood
Journal:  Open Biol       Date:  2021-02-03       Impact factor: 6.411

9.  Direct 1,3-butadiene biosynthesis in Escherichia coli via a tailored ferulic acid decarboxylase mutant.

Authors:  Yutaro Mori; Shuhei Noda; Tomokazu Shirai; Akihiko Kondo
Journal:  Nat Commun       Date:  2021-04-13       Impact factor: 14.919

10.  Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols.

Authors:  Hesam Arabnejad; Elvira Bombino; Dana I Colpa; Peter A Jekel; Milos Trajkovic; Hein J Wijma; Dick B Janssen
Journal:  Chembiochem       Date:  2020-03-05       Impact factor: 3.164

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