Literature DB >> 29779985

Systems Biology-Based Investigation of Host-Plasmodium Interactions.

Maren L Smith1, Mark P Styczynski2.   

Abstract

Malaria is a serious, complex disease caused by parasites of the genus Plasmodium. Plasmodium parasites affect multiple tissues as they evade immune responses, replicate, sexually reproduce, and transmit between vertebrate and invertebrate hosts. The explosion of omics technologies has enabled large-scale collection of Plasmodium infection data, revealing systems-scale patterns, mechanisms of pathogenesis, and the ways that host and pathogen affect each other. Here, we provide an overview of recent efforts using systems biology approaches to study host-Plasmodium interactions and the biological themes that have emerged from these efforts. We discuss some of the challenges in using systems biology for this goal, key research efforts needed to address those issues, and promising future malaria applications of systems biology.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Plasmodium; host–pathogen interaction; malaria; omics; systems biology

Mesh:

Year:  2018        PMID: 29779985      PMCID: PMC7028355          DOI: 10.1016/j.pt.2018.04.003

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  109 in total

1.  Distinct malaria parasite sporozoites reveal transcriptional changes that cause differential tissue infection competence in the mosquito vector and mammalian host.

Authors:  Sebastian A Mikolajczak; Hilda Silva-Rivera; Xinxia Peng; Alice S Tarun; Nelly Camargo; Vanessa Jacobs-Lorena; Thomas M Daly; Lawrence W Bergman; Patricia de la Vega; Jack Williams; Ahmed S I Aly; Stefan H I Kappe
Journal:  Mol Cell Biol       Date:  2008-08-18       Impact factor: 4.272

2.  Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis.

Authors:  C Ben Mamoun; I Y Gluzman; C Hott; S K MacMillan; A S Amarakone; D L Anderson; J M Carlton; J B Dame; D Chakrabarti; R K Martin; B H Brownstein; D E Goldberg
Journal:  Mol Microbiol       Date:  2001-01       Impact factor: 3.501

3.  Comparative genomics of the neglected human malaria parasite Plasmodium vivax.

Authors:  Jane M Carlton; John H Adams; Joana C Silva; Shelby L Bidwell; Hernan Lorenzi; Elisabet Caler; Jonathan Crabtree; Samuel V Angiuoli; Emilio F Merino; Paolo Amedeo; Qin Cheng; Richard M R Coulson; Brendan S Crabb; Hernando A Del Portillo; Kobby Essien; Tamara V Feldblyum; Carmen Fernandez-Becerra; Paul R Gilson; Amy H Gueye; Xiang Guo; Simon Kang'a; Taco W A Kooij; Michael Korsinczky; Esmeralda V-S Meyer; Vish Nene; Ian Paulsen; Owen White; Stuart A Ralph; Qinghu Ren; Tobias J Sargeant; Steven L Salzberg; Christian J Stoeckert; Steven A Sullivan; Marcio M Yamamoto; Stephen L Hoffman; Jennifer R Wortman; Malcolm J Gardner; Mary R Galinski; John W Barnwell; Claire M Fraser-Liggett
Journal:  Nature       Date:  2008-10-09       Impact factor: 49.962

4.  Transcriptional profiling of Plasmodium falciparum parasites from patients with severe malaria identifies distinct low vs. high parasitemic clusters.

Authors:  Danny A Milner; Nathalie Pochet; Malkie Krupka; Chris Williams; Karl Seydel; Terrie E Taylor; Yves Van de Peer; Aviv Regev; Dyann Wirth; Johanna P Daily; Jill P Mesirov
Journal:  PLoS One       Date:  2012-07-18       Impact factor: 3.240

5.  Ookinete-interacting proteins on the microvillar surface are partitioned into detergent resistant membranes of Anopheles gambiae midguts.

Authors:  Lindsay A Parish; David R Colquhoun; Ceereena Ubaida Mohien; Alexey E Lyashkov; David R Graham; Rhoel R Dinglasan
Journal:  J Proteome Res       Date:  2011-10-17       Impact factor: 4.466

6.  Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers.

Authors:  Talleh Almelli; Grégory Nuel; Emmanuel Bischoff; Agnès Aubouy; Mohamed Elati; Christian William Wang; Marie-Agnès Dillies; Jean-Yves Coppée; Georges Nko Ayissi; Leonardo Kishi Basco; Christophe Rogier; Nicaise Tuikue Ndam; Philippe Deloron; Rachida Tahar
Journal:  PLoS One       Date:  2014-12-05       Impact factor: 3.240

7.  A comprehensive evaluation of rodent malaria parasite genomes and gene expression.

Authors:  Thomas D Otto; Ulrike Böhme; Andrew P Jackson; Martin Hunt; Blandine Franke-Fayard; Wieteke A M Hoeijmakers; Agnieszka A Religa; Lauren Robertson; Mandy Sanders; Solabomi A Ogun; Deirdre Cunningham; Annette Erhart; Oliver Billker; Shahid M Khan; Hendrik G Stunnenberg; Jean Langhorne; Anthony A Holder; Andrew P Waters; Chris I Newbold; Arnab Pain; Matthew Berriman; Chris J Janse
Journal:  BMC Biol       Date:  2014-10-30       Impact factor: 7.431

8.  New insights into the Plasmodium vivax transcriptome using RNA-Seq.

Authors:  Lei Zhu; Sachel Mok; Mallika Imwong; Anchalee Jaidee; Bruce Russell; Francois Nosten; Nicholas P Day; Nicholas J White; Peter R Preiser; Zbynek Bozdech
Journal:  Sci Rep       Date:  2016-02-09       Impact factor: 4.379

Review 9.  Multi-omics approaches to disease.

Authors:  Yehudit Hasin; Marcus Seldin; Aldons Lusis
Journal:  Genome Biol       Date:  2017-05-05       Impact factor: 13.583

10.  Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection.

Authors:  Luke A Baton; Anne Robertson; Emma Warr; Michael R Strand; George Dimopoulos
Journal:  BMC Genomics       Date:  2009-06-05       Impact factor: 3.969

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  6 in total

Review 1.  Systems biology of malaria explored with nonhuman primates.

Authors:  Mary R Galinski
Journal:  Malar J       Date:  2022-06-07       Impact factor: 3.469

Review 2.  Functional genomics of simian malaria parasites and host-parasite interactions.

Authors:  Mary R Galinski
Journal:  Brief Funct Genomics       Date:  2019-09-24       Impact factor: 4.241

3.  Diversity, distribution, and drivers of Polychromophilus infection in Malagasy bats.

Authors:  Mercia Rasoanoro; Steven M Goodman; Milijaona Randrianarivelojosia; Mbola Rakotondratsimba; Koussay Dellagi; Pablo Tortosa; Beza Ramasindrazana
Journal:  Malar J       Date:  2021-03-20       Impact factor: 2.979

4.  A global [Formula: see text] gene co-expression network constructed from hundreds of experimental conditions with missing values.

Authors:  Junyao Kuang; Nicolas Buchon; Kristin Michel; Caterina Scoglio
Journal:  BMC Bioinformatics       Date:  2022-05-09       Impact factor: 3.307

Review 5.  An Ecologically Framed Comparison of The Potential for Zoonotic Transmission of Non-Human and Human-Infecting Species of Malaria Parasite.

Authors:  Nicole F Clark; Andrew W Taylor-Robinson
Journal:  Yale J Biol Med       Date:  2021-06-30

6.  Transcriptome analysis of blood and spleen in virulent and avirulent mouse malaria infection.

Authors:  Yuancun Zhao; Caroline Hosking; Deirdre Cunningham; Jean Langhorne; Jing-Wen Lin
Journal:  Sci Data       Date:  2020-08-04       Impact factor: 6.444

  6 in total

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