Literature DB >> 29779105

Guide RNA Design for CRISPR/Cas9-Mediated Potato Genome Editing.

A V Khromov1,2, V A Gushchin1,2, V I Timerbaev1,3, N O Kalinina1,2, M E Taliansky1,4, V V Makarov5,6.   

Abstract

The activity of the pool of sgRNA molecules designed for different regions of potato coilin and phytoene desaturase genes was compared in vitro. Due to the presence of nucleotides unpaired with DNA, sgRNA is able not only to inhibit but also to stimulate the activity of the Cas9-sgRNA complex in vitro. Although the first six nucleotides located in the DNA substrate proximally to the PAM site at the 3' end are the binding sites for cas9, they had no significant effect on the activity of the Cas9-sgRNA complex.

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Year:  2018        PMID: 29779105     DOI: 10.1134/S1607672918020084

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


  10 in total

Review 1.  Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes.

Authors:  Sinan Al-Attar; Edze R Westra; John van der Oost; Stan J J Brouns
Journal:  Biol Chem       Date:  2011-02-07       Impact factor: 3.915

Review 2.  A Perspective on the Future of High-Throughput RNAi Screening: Will CRISPR Cut Out the Competition or Can RNAi Help Guide the Way?

Authors:  Jessica Taylor; Simon Woodcock
Journal:  J Biomol Screen       Date:  2015-06-05

3.  Coilin, the signature protein of Cajal bodies, differentially modulates the interactions of plants with viruses in widely different taxa.

Authors:  Jane Shaw; Andrew J Love; Svetlana S Makarova; Natalia O Kalinina; Bryan D Harrison; Michael E Taliansky
Journal:  Nucleus       Date:  2014-02-24       Impact factor: 4.197

4.  Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation.

Authors:  John G Doench; Ella Hartenian; Daniel B Graham; Zuzana Tothova; Mudra Hegde; Ian Smith; Meagan Sullender; Benjamin L Ebert; Ramnik J Xavier; David E Root
Journal:  Nat Biotechnol       Date:  2014-09-03       Impact factor: 54.908

5.  Structure and Engineering of Francisella novicida Cas9.

Authors:  Hisato Hirano; Jonathan S Gootenberg; Takuro Horii; Omar O Abudayyeh; Mika Kimura; Patrick D Hsu; Takanori Nakane; Ryuichiro Ishitani; Izuho Hatada; Feng Zhang; Hiroshi Nishimasu; Osamu Nureki
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

6.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

7.  RNA-guided human genome engineering via Cas9.

Authors:  Prashant Mali; Luhan Yang; Kevin M Esvelt; John Aach; Marc Guell; James E DiCarlo; Julie E Norville; George M Church
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

8.  Efficient CRISPR/Cas9-based gene knockout in watermelon.

Authors:  Shouwei Tian; Linjian Jiang; Qiang Gao; Jie Zhang; Mei Zong; Haiying Zhang; Yi Ren; Shaogui Guo; Guoyi Gong; Fan Liu; Yong Xu
Journal:  Plant Cell Rep       Date:  2016-12-19       Impact factor: 4.570

9.  Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

10.  Generation of muscular dystrophy model rats with a CRISPR/Cas system.

Authors:  Katsuyuki Nakamura; Wataru Fujii; Masaya Tsuboi; Jun Tanihata; Naomi Teramoto; Shiho Takeuchi; Kunihiko Naito; Keitaro Yamanouchi; Masugi Nishihara
Journal:  Sci Rep       Date:  2014-07-09       Impact factor: 4.379

  10 in total
  3 in total

1.  CRISPR/Cas Genome Editing in Potato: Current Status and Future Perspectives.

Authors:  Jagesh Kumar Tiwari; Tanuja Buckseth; Clarissa Challam; Rasna Zinta; Nisha Bhatia; Dalamu Dalamu; Sharmistha Naik; Anuj K Poonia; Rajesh K Singh; Satish K Luthra; Vinod Kumar; Manoj Kumar
Journal:  Front Genet       Date:  2022-02-02       Impact factor: 4.599

Review 2.  CRISPR/Cas9 and Nanotechnology Pertinence in Agricultural Crop Refinement.

Authors:  Banavath Jayanna Naik; Ganesh Shimoga; Seong-Cheol Kim; Mekapogu Manjulatha; Chinreddy Subramanyam Reddy; Ramasubba Reddy Palem; Manu Kumar; Sang-Youn Kim; Soo-Hong Lee
Journal:  Front Plant Sci       Date:  2022-04-08       Impact factor: 6.627

Review 3.  Recent Advances in Molecular Improvement for Potato Tuber Traits.

Authors:  Daraz Ahmad; Zhongwei Zhang; Haroon Rasheed; Xiaoyong Xu; Jinsong Bao
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

  3 in total

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