Literature DB >> 29771539

Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development.

Daniel G A Smith1, Lori A Burns1, Dominic A Sirianni1, Daniel R Nascimento2, Ashutosh Kumar3, Andrew M James3, Jeffrey B Schriber4, Tianyuan Zhang4, Boyi Zhang5, Adam S Abbott5, Eric J Berquist6, Marvin H Lechner7, Leonardo A Cunha8, Alexander G Heide9, Jonathan M Waldrop10, Tyler Y Takeshita11, Asem Alenaizan1, Daniel Neuhauser12, Rollin A King9, Andrew C Simmonett13, Justin M Turney5, Henry F Schaefer5, Francesco A Evangelista4, A Eugene DePrince2, T Daniel Crawford3, Konrad Patkowski10, C David Sherrill1.   

Abstract

Psi4NumPy demonstrates the use of efficient computational kernels from the open-source Psi4 program through the popular NumPy library for linear algebra in Python to facilitate the rapid development of clear, understandable Python computer code for new quantum chemical methods, while maintaining a relatively low execution time. Using these tools, reference implementations have been created for a number of methods, including self-consistent field (SCF), SCF response, many-body perturbation theory, coupled-cluster theory, configuration interaction, and symmetry-adapted perturbation theory. Furthermore, several reference codes have been integrated into Jupyter notebooks, allowing background, underlying theory, and formula information to be associated with the implementation. Psi4NumPy tools and associated reference implementations can lower the barrier for future development of quantum chemistry methods. These implementations also demonstrate the power of the hybrid C++/Python programming approach employed by the Psi4 program.

Year:  2018        PMID: 29771539     DOI: 10.1021/acs.jctc.8b00286

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  Classical Pauli repulsion: An anisotropic, atomic multipole model.

Authors:  Joshua A Rackers; Jay W Ponder
Journal:  J Chem Phys       Date:  2019-02-28       Impact factor: 3.488

2.  Psi4 1.4: Open-source software for high-throughput quantum chemistry.

Authors:  Daniel G A Smith; Lori A Burns; Andrew C Simmonett; Robert M Parrish; Matthew C Schieber; Raimondas Galvelis; Peter Kraus; Holger Kruse; Roberto Di Remigio; Asem Alenaizan; Andrew M James; Susi Lehtola; Jonathon P Misiewicz; Maximilian Scheurer; Robert A Shaw; Jeffrey B Schriber; Yi Xie; Zachary L Glick; Dominic A Sirianni; Joseph Senan O'Brien; Jonathan M Waldrop; Ashutosh Kumar; Edward G Hohenstein; Benjamin P Pritchard; Bernard R Brooks; Henry F Schaefer; Alexander Yu Sokolov; Konrad Patkowski; A Eugene DePrince; Uğur Bozkaya; Rollin A King; Francesco A Evangelista; Justin M Turney; T Daniel Crawford; C David Sherrill
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

3.  TeraChem: Accelerating electronic structure and ab initio molecular dynamics with graphical processing units.

Authors:  Stefan Seritan; Christoph Bannwarth; B Scott Fales; Edward G Hohenstein; Sara I L Kokkila-Schumacher; Nathan Luehr; James W Snyder; Chenchen Song; Alexey V Titov; Ivan S Ufimtsev; Todd J Martínez
Journal:  J Chem Phys       Date:  2020-06-14       Impact factor: 3.488

4.  An adaptive variational algorithm for exact molecular simulations on a quantum computer.

Authors:  Harper R Grimsley; Sophia E Economou; Edwin Barnes; Nicholas J Mayhall
Journal:  Nat Commun       Date:  2019-07-08       Impact factor: 14.919

5.  Pure non-local machine-learned density functional theory for electron correlation.

Authors:  Johannes T Margraf; Karsten Reuter
Journal:  Nat Commun       Date:  2021-01-12       Impact factor: 14.919

6.  Dynamical strengthening of covalent and non-covalent molecular interactions by nuclear quantum effects at finite temperature.

Authors:  Huziel E Sauceda; Valentin Vassilev-Galindo; Stefan Chmiela; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Nat Commun       Date:  2021-01-19       Impact factor: 14.919

7.  Environment Effects on X-Ray Absorption Spectra With Quantum Embedded Real-Time Time-Dependent Density Functional Theory Approaches.

Authors:  Matteo De Santis; Valérie Vallet; André Severo Pereira Gomes
Journal:  Front Chem       Date:  2022-02-28       Impact factor: 5.221

8.  Coexistence of Intra- and Intermolecular Hydrogen Bonds: Salicylic Acid and Salicylamide and Their Thiol Counterparts.

Authors:  Samira Gholami; Mohammad Aarabi; Sławomir J Grabowski
Journal:  J Phys Chem A       Date:  2021-02-16       Impact factor: 2.944

9.  Parameterization of Boronates Using VFFDT and Paramfit for Molecular Dynamics Simulation.

Authors:  Barış Kurt; Hamdi Temel
Journal:  Molecules       Date:  2020-05-08       Impact factor: 4.411

10.  Environmental Effects with Frozen-Density Embedding in Real-Time Time-Dependent Density Functional Theory Using Localized Basis Functions.

Authors:  Matteo De Santis; Leonardo Belpassi; Christoph R Jacob; André Severo Pereira Gomes; Francesco Tarantelli; Lucas Visscher; Loriano Storchi
Journal:  J Chem Theory Comput       Date:  2020-08-15       Impact factor: 6.006

  10 in total

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