| Literature DB >> 29765734 |
Md Serajul Haque Faizi1, Necmi Dege2, Turganbay S Iskenderov3.
Abstract
In the title class="Chemical">Schiff base compound, <class="Chemical">span class="Chemical">C19H17N3O, the configuration about the C=N bond is E. The mol-ecule is non-planar, with the phenolic and pyridine rings being inclined to the central benzene ring by 56.59 (4) and 15.13 (14)°, respectively. In the crystal, mol-ecules are linked by pairs of O-H⋯N hydrogen bonds, forming inversion dimers. The dimers are connected to neighbouring dimers by N-H⋯O hydrogen bonds and C-H⋯π inter-actions, forming layers parallel to the bc plane. The layers are linked by offset π-π inter-actions [inter-centroid distance = 3.779 (2) Å], forming a three-dimensional supra-molecular structure. Quantum chemical calculations of the mol-ecule are in good agreement with the solid-state structure.Entities:
Keywords: Schiff base; aminophenylaminomethylphenol; crystal structure; hydrogen bonding; offset π–π interactions; pyridine-2-carbaldehyde
Year: 2018 PMID: 29765734 PMCID: PMC5947814 DOI: 10.1107/S2056989018003043
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 40% probability level.
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the pyridine ring, N3/C15-C19.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N3i | 0.88 (2) | 1.92 (2) | 2.796 (3) | 179 (3) |
| N1—H1 | 0.86 | 2.13 | 2.982 (3) | 170 |
| C7—H7 | 0.97 | 2.93 | 3.687 (3) | 136 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2A view along the b axis of the inversion dimers, formed via. pairs of O—H⋯N hydrogen bonds (thin blue lines), enclosing an (32) ring motif. The dimers are linked by N—H⋯O hydrogen bonds (see Table 1 ▸ for details).
Figure 3A view along the a axis of the layer-like structure in the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (Table 1 ▸) and only the H atoms involved in hydrogen bonding have been included.
Comparison of selected geometric data for (I) (Å, °) from calculated (DFT) and X-ray data.
| Bonds | X-ray | B3LYP/6–311G(d,p). |
|---|---|---|
| N1—C7 | 1.439 (3) | 1.438 |
| N1—C8 | 1.368 (3) | 1.368 |
| N2—C11 | 1.409 (3) | 1.409 |
| N2—C14 | 1.256 (3) | 1.256 |
| C1—O1 | 1.388 (3) | 1.388 |
| C4—C7 | 1.512 (3) | 1.512 |
| C14—C15 | 1.460 (3) | 1.460 |
| N1—C7—C4 | 112.3 (2) | 112.28 |
| C8—N1—C7 | 123.4 (2) | 123.45 |
| C11—N2—C14 | 121.5 (2) | 121.54 |
| N2—C14—C15 | 122.2 (3) | 122.23 |
| C4—C7—N1—C8 | −166.3 (2) | −166.34 |
| C15—C14—N2—C11 | 176.4 (2) | 176.39 |
Figure 4Electron distribution of the HOMO-1, HOMO, LUMO and LUMO+1 energy levels for the title molecule.
Experimental details
| Crystal data | |
| Chemical formula | C19H17N3O |
|
| 303.22 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 10.5652 (7), 7.9136 (6), 20.8153 (13) |
| β (°) | 118.408 (4) |
|
| 1530.77 (19) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.08 |
| Crystal size (mm) | 0.21 × 0.15 × 0.11 |
| Data collection | |
| Diffractometer | Bruker SMART CCD area detector |
| Absorption correction | Multi-scan ( |
|
| 0.785, 0.856 |
| No. of measured, independent and observed [ | 17211, 2664, 1087 |
|
| 0.122 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.040, 0.092, 0.73 |
| No. of reflections | 2664 |
| No. of parameters | 212 |
| No. of restraints | 7 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.14, −0.15 |
Computer programs: SMART and SAINT (Bruker, 2012 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).
| C19H17N3O | |
| Monoclinic, | Mo |
| Cell parameters from 1114 reflections | |
| θ = 2.8–18.2° | |
| µ = 0.08 mm−1 | |
| β = 118.408 (4)° | |
| Plate, yellow | |
| 0.21 × 0.15 × 0.11 mm |
| Bruker SMART CCD area detector diffractometer | 2664 independent reflections |
| Radiation source: sealed tube | 1087 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 25.0°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 17211 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2664 reflections | (Δ/σ)max < 0.001 |
| 212 parameters | Δρmax = 0.14 e Å−3 |
| 7 restraints | Δρmin = −0.15 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | −0.2029 (2) | 0.4843 (3) | −0.37245 (9) | 0.0677 (6) | |
| N2 | 0.3840 (2) | 0.9002 (3) | 0.25128 (10) | 0.0575 (6) | |
| N1 | 0.0654 (2) | 0.8060 (2) | −0.05048 (10) | 0.0584 (6) | |
| H1A | 0.104122 | 0.846064 | −0.075424 | 0.070* | |
| N3 | 0.4388 (2) | 0.7338 (3) | 0.42061 (11) | 0.0551 (6) | |
| C6 | −0.2709 (3) | 0.6253 (3) | −0.29168 (13) | 0.0618 (8) | |
| H6 | −0.363931 | 0.638443 | −0.329860 | 0.074* | |
| C1 | −0.1675 (3) | 0.5496 (3) | −0.30408 (13) | 0.0536 (7) | |
| C2 | −0.0284 (3) | 0.5374 (3) | −0.24837 (13) | 0.0569 (7) | |
| H2 | 0.042773 | 0.490422 | −0.257010 | 0.068* | |
| C3 | 0.0050 (3) | 0.5955 (3) | −0.17948 (12) | 0.0560 (7) | |
| H3 | 0.099320 | 0.587513 | −0.142046 | 0.067* | |
| C4 | −0.0990 (3) | 0.6653 (3) | −0.16507 (12) | 0.0517 (7) | |
| C5 | −0.2366 (3) | 0.6822 (3) | −0.22213 (13) | 0.0611 (8) | |
| H5 | −0.307393 | 0.732180 | −0.213979 | 0.073* | |
| C8 | 0.1329 (3) | 0.8340 (3) | 0.02322 (13) | 0.0489 (7) | |
| C7 | −0.0669 (3) | 0.7130 (3) | −0.08846 (12) | 0.0603 (8) | |
| H7A | −0.145423 | 0.781051 | −0.090815 | 0.072* | |
| H7B | −0.060997 | 0.611176 | −0.061241 | 0.072* | |
| C13 | 0.0849 (3) | 0.7669 (3) | 0.06958 (13) | 0.0584 (7) | |
| H13 | −0.001697 | 0.708081 | 0.050074 | 0.070* | |
| C12 | 0.1648 (3) | 0.7869 (3) | 0.14445 (13) | 0.0579 (8) | |
| H12 | 0.131692 | 0.738651 | 0.174403 | 0.069* | |
| C11 | 0.2923 (3) | 0.8763 (3) | 0.17598 (13) | 0.0508 (7) | |
| C10 | 0.3358 (3) | 0.9513 (3) | 0.12946 (13) | 0.0567 (7) | |
| H10 | 0.419007 | 1.016616 | 0.149006 | 0.068* | |
| C9 | 0.2582 (3) | 0.9308 (3) | 0.05489 (13) | 0.0554 (7) | |
| H9 | 0.290049 | 0.982488 | 0.025065 | 0.066* | |
| C14 | 0.3648 (3) | 0.8223 (3) | 0.29852 (13) | 0.0590 (7) | |
| H14 | 0.285013 | 0.752151 | 0.283243 | 0.071* | |
| C15 | 0.4635 (3) | 0.8382 (3) | 0.37661 (13) | 0.0515 (7) | |
| C16 | 0.5780 (3) | 0.9501 (3) | 0.40340 (13) | 0.0598 (8) | |
| H16 | 0.592239 | 1.021323 | 0.371868 | 0.072* | |
| C17 | 0.6708 (3) | 0.9544 (3) | 0.47755 (14) | 0.0647 (8) | |
| H17 | 0.748321 | 1.028674 | 0.496625 | 0.078* | |
| C18 | 0.6472 (3) | 0.8476 (3) | 0.52292 (14) | 0.0616 (8) | |
| H18 | 0.708703 | 0.847287 | 0.573011 | 0.074* | |
| C19 | 0.5308 (3) | 0.7418 (3) | 0.49240 (14) | 0.0594 (7) | |
| H19 | 0.514376 | 0.670992 | 0.523359 | 0.071* | |
| H1 | −0.278 (3) | 0.416 (4) | −0.3883 (16) | 0.133 (15)* |
| O1 | 0.0697 (15) | 0.0891 (15) | 0.0397 (11) | −0.0111 (13) | 0.0222 (11) | −0.0157 (10) |
| N2 | 0.0604 (15) | 0.0689 (15) | 0.0356 (13) | −0.0049 (11) | 0.0167 (12) | 0.0004 (10) |
| N1 | 0.0669 (16) | 0.0712 (16) | 0.0359 (13) | −0.0119 (13) | 0.0236 (12) | −0.0055 (11) |
| N3 | 0.0579 (15) | 0.0626 (15) | 0.0346 (13) | −0.0040 (12) | 0.0137 (12) | −0.0020 (11) |
| C6 | 0.0483 (18) | 0.083 (2) | 0.0389 (17) | 0.0012 (16) | 0.0083 (15) | −0.0036 (14) |
| C1 | 0.063 (2) | 0.0563 (19) | 0.0415 (17) | −0.0068 (15) | 0.0248 (16) | −0.0053 (13) |
| C2 | 0.0477 (19) | 0.071 (2) | 0.0448 (17) | 0.0031 (15) | 0.0160 (15) | −0.0046 (14) |
| C3 | 0.0480 (18) | 0.0675 (19) | 0.0385 (16) | 0.0028 (15) | 0.0091 (14) | −0.0027 (13) |
| C4 | 0.0574 (19) | 0.0574 (18) | 0.0360 (16) | 0.0008 (14) | 0.0187 (15) | −0.0017 (12) |
| C5 | 0.056 (2) | 0.077 (2) | 0.0458 (17) | 0.0045 (15) | 0.0208 (16) | −0.0058 (14) |
| C8 | 0.0572 (19) | 0.0510 (18) | 0.0332 (15) | 0.0044 (14) | 0.0172 (14) | 0.0008 (12) |
| C7 | 0.0610 (19) | 0.072 (2) | 0.0436 (17) | −0.0006 (16) | 0.0216 (15) | −0.0059 (14) |
| C13 | 0.0591 (18) | 0.073 (2) | 0.0391 (17) | −0.0132 (15) | 0.0198 (15) | −0.0047 (13) |
| C12 | 0.0629 (19) | 0.068 (2) | 0.0411 (17) | −0.0106 (16) | 0.0237 (15) | −0.0001 (13) |
| C11 | 0.0574 (19) | 0.0553 (18) | 0.0352 (16) | −0.0046 (14) | 0.0182 (15) | 0.0004 (13) |
| C10 | 0.0584 (19) | 0.0597 (19) | 0.0475 (17) | −0.0085 (14) | 0.0216 (16) | −0.0041 (13) |
| C9 | 0.063 (2) | 0.062 (2) | 0.0435 (17) | −0.0077 (15) | 0.0272 (16) | −0.0019 (13) |
| C14 | 0.0554 (17) | 0.0665 (19) | 0.0426 (17) | −0.0065 (14) | 0.0130 (14) | −0.0040 (13) |
| C15 | 0.0539 (18) | 0.0554 (19) | 0.0398 (16) | 0.0045 (15) | 0.0179 (15) | −0.0044 (13) |
| C16 | 0.066 (2) | 0.065 (2) | 0.0465 (18) | −0.0075 (16) | 0.0251 (16) | −0.0048 (14) |
| C17 | 0.060 (2) | 0.068 (2) | 0.0556 (19) | −0.0099 (15) | 0.0192 (17) | −0.0072 (15) |
| C18 | 0.061 (2) | 0.067 (2) | 0.0398 (16) | 0.0021 (16) | 0.0099 (15) | −0.0047 (15) |
| C19 | 0.069 (2) | 0.0624 (19) | 0.0396 (18) | −0.0046 (17) | 0.0198 (16) | −0.0007 (13) |
| O1—C1 | 1.388 (3) | C8—C9 | 1.394 (3) |
| O1—H1 | 0.879 (17) | C7—H7A | 0.9700 |
| N2—C14 | 1.256 (3) | C7—H7B | 0.9700 |
| N2—C11 | 1.409 (3) | C13—C12 | 1.384 (3) |
| N1—C8 | 1.368 (3) | C13—H13 | 0.9300 |
| N1—C7 | 1.439 (3) | C12—C11 | 1.380 (3) |
| N1—H1A | 0.8600 | C12—H12 | 0.9300 |
| N3—C19 | 1.341 (3) | C11—C10 | 1.387 (3) |
| N3—C15 | 1.347 (3) | C10—C9 | 1.377 (3) |
| C6—C1 | 1.374 (3) | C10—H10 | 0.9300 |
| C6—C5 | 1.390 (3) | C9—H9 | 0.9300 |
| C6—H6 | 0.9300 | C14—C15 | 1.460 (3) |
| C1—C2 | 1.376 (3) | C14—H14 | 0.9300 |
| C2—C3 | 1.382 (3) | C15—C16 | 1.385 (3) |
| C2—H2 | 0.9300 | C16—C17 | 1.380 (3) |
| C3—C4 | 1.384 (3) | C16—H16 | 0.9300 |
| C3—H3 | 0.9300 | C17—C18 | 1.376 (3) |
| C4—C5 | 1.378 (3) | C17—H17 | 0.9300 |
| C4—C7 | 1.512 (3) | C18—C19 | 1.369 (3) |
| C5—H5 | 0.9300 | C18—H18 | 0.9300 |
| C8—C13 | 1.391 (3) | C19—H19 | 0.9300 |
| C1—O1—H1 | 112 (2) | C12—C13—C8 | 120.6 (2) |
| C14—N2—C11 | 121.5 (2) | C12—C13—H13 | 119.7 |
| C8—N1—C7 | 123.4 (2) | C8—C13—H13 | 119.7 |
| C8—N1—H1A | 118.3 | C11—C12—C13 | 121.9 (2) |
| C7—N1—H1A | 118.3 | C11—C12—H12 | 119.0 |
| C19—N3—C15 | 117.2 (2) | C13—C12—H12 | 119.0 |
| C1—C6—C5 | 120.0 (2) | C12—C11—C10 | 117.4 (2) |
| C1—C6—H6 | 120.0 | C12—C11—N2 | 126.7 (2) |
| C5—C6—H6 | 120.0 | C10—C11—N2 | 116.0 (2) |
| C6—C1—C2 | 119.9 (2) | C9—C10—C11 | 121.2 (2) |
| C6—C1—O1 | 120.3 (2) | C9—C10—H10 | 119.4 |
| C2—C1—O1 | 119.8 (3) | C11—C10—H10 | 119.4 |
| C1—C2—C3 | 119.6 (2) | C10—C9—C8 | 121.3 (2) |
| C1—C2—H2 | 120.2 | C10—C9—H9 | 119.3 |
| C3—C2—H2 | 120.2 | C8—C9—H9 | 119.3 |
| C2—C3—C4 | 121.3 (2) | N2—C14—C15 | 122.2 (3) |
| C2—C3—H3 | 119.3 | N2—C14—H14 | 118.9 |
| C4—C3—H3 | 119.3 | C15—C14—H14 | 118.9 |
| C5—C4—C3 | 118.2 (2) | N3—C15—C16 | 122.2 (2) |
| C5—C4—C7 | 120.0 (2) | N3—C15—C14 | 115.9 (2) |
| C3—C4—C7 | 121.7 (2) | C16—C15—C14 | 121.9 (2) |
| C4—C5—C6 | 120.8 (2) | C17—C16—C15 | 119.1 (2) |
| C4—C5—H5 | 119.6 | C17—C16—H16 | 120.5 |
| C6—C5—H5 | 119.6 | C15—C16—H16 | 120.5 |
| N1—C8—C13 | 123.3 (2) | C18—C17—C16 | 119.2 (3) |
| N1—C8—C9 | 119.4 (2) | C18—C17—H17 | 120.4 |
| C13—C8—C9 | 117.3 (2) | C16—C17—H17 | 120.4 |
| N1—C7—C4 | 112.3 (2) | C19—C18—C17 | 118.3 (2) |
| N1—C7—H7A | 109.2 | C19—C18—H18 | 120.9 |
| C4—C7—H7A | 109.2 | C17—C18—H18 | 120.9 |
| N1—C7—H7B | 109.2 | N3—C19—C18 | 124.0 (2) |
| C4—C7—H7B | 109.2 | N3—C19—H19 | 118.0 |
| H7A—C7—H7B | 107.9 | C18—C19—H19 | 118.0 |
| C5—C6—C1—C2 | −3.1 (4) | C13—C12—C11—N2 | −178.0 (2) |
| C5—C6—C1—O1 | 176.5 (2) | C14—N2—C11—C12 | 8.6 (4) |
| C6—C1—C2—C3 | 2.6 (4) | C14—N2—C11—C10 | −171.5 (2) |
| O1—C1—C2—C3 | −177.0 (2) | C12—C11—C10—C9 | −2.9 (4) |
| C1—C2—C3—C4 | 0.3 (4) | N2—C11—C10—C9 | 177.2 (2) |
| C2—C3—C4—C5 | −2.6 (4) | C11—C10—C9—C8 | 0.0 (4) |
| C2—C3—C4—C7 | 173.8 (2) | N1—C8—C9—C10 | −174.9 (2) |
| C3—C4—C5—C6 | 2.1 (4) | C13—C8—C9—C10 | 3.5 (4) |
| C7—C4—C5—C6 | −174.3 (2) | C11—N2—C14—C15 | 176.4 (2) |
| C1—C6—C5—C4 | 0.7 (4) | C19—N3—C15—C16 | −0.2 (3) |
| C7—N1—C8—C13 | 3.9 (4) | C19—N3—C15—C14 | 177.8 (2) |
| C7—N1—C8—C9 | −177.7 (2) | N2—C14—C15—N3 | −173.0 (2) |
| C8—N1—C7—C4 | −166.3 (2) | N2—C14—C15—C16 | 5.0 (4) |
| C5—C4—C7—N1 | −137.0 (2) | N3—C15—C16—C17 | 0.4 (4) |
| C3—C4—C7—N1 | 46.7 (3) | C14—C15—C16—C17 | −177.5 (2) |
| N1—C8—C13—C12 | 174.1 (2) | C15—C16—C17—C18 | 0.0 (4) |
| C9—C8—C13—C12 | −4.3 (4) | C16—C17—C18—C19 | −0.7 (4) |
| C8—C13—C12—C11 | 1.5 (4) | C15—N3—C19—C18 | −0.5 (4) |
| C13—C12—C11—C10 | 2.1 (4) | C17—C18—C19—N3 | 1.0 (4) |
| H··· | ||||
| O1—H1···N3i | 0.88 (2) | 1.92 (2) | 2.796 (3) | 179 (3) |
| N1—H1 | 0.86 | 2.13 | 2.982 (3) | 170 |
| C7—H7 | 0.97 | 2.93 | 3.687 (3) | 136 |