| Literature DB >> 29765644 |
Viswanadh Nalla1,2, Aslam Shaikh1,2, Sanket Bapat3, Renu Vyas3, M Karthikeyan1,2, P Yogeeswari4, D Sriram4, M Muthukrishnan1,2.
Abstract
A series of 20 novel chromone embedded [1,2,3]-triazoles derivatives were synthesized via an easy and convenient synthetic procedure starting from 2-hydroxy acetophenone. The in vitro anti-mycobacterial evaluation studies carried out in this work reveal that seven compounds exhibit significant inhibition against Mycobacterium tuberculosis H37Rv strain with MIC in the range of 1.56-12.5 µg ml-1. Noticeably, compound 6s was the most potent compound in vitro with a MIC value of 1.56 µg ml-1. Molecular docking and chemoinformatics studies revealed that compound 6s displayed drug-like properties against the enoyl-acyl carrier protein reductase of M. tuberculosis further establishing its potential as a potent inhibitor.Entities:
Keywords: anti-mycobacterial activity; chromone; molecular docking; triazole
Year: 2018 PMID: 29765644 PMCID: PMC5936909 DOI: 10.1098/rsos.171750
Source DB: PubMed Journal: R Soc Open Sci ISSN: 2054-5703 Impact factor: 2.963
Figure 1.(a) Representative example of chromones and [1,2,3]-triazole analogues and their anti-tubercular activity; (b) our design of chromone embedded [1,2,3]-triazole framework as chimeric scaffold.
Scheme 1.Synthesis of chromone embedded [1,2,3]-triazoles.
In vitro anti-tubercular activity of chromone embedded [1,2,3]-triazoles against Mycobacterium tuberculosis H37Rv.
| MIC | MIC | ||||||
|---|---|---|---|---|---|---|---|
| entry | compound | (μg ml−1)a | cytotoxicity | entry | compound | (μg ml−1)a | cytotoxicity |
| 25 | 12.86 | 50 | 26.12 | ||||
| 25 | 26.82 | 50 | 30.60 | ||||
| 25 | 16.12 | 6.25 | 36.82 | ||||
| 50 | 20.60 | 50 | 23.74 | ||||
| 25 | 20.12 | 3.125 | 18.42 | ||||
| 3.125 | 20.12 | 12.5 | 20.12 | ||||
| 6.25 | 28.40 | 25 | 28.62 | ||||
| 3.125 | 18.68 | 50 | 30.60 | ||||
| 25 | 26.82 | 1.56 | 24.68 | ||||
| 50 | 30.34 | 50 | 30.12 |
aRifampicin (MIC, 0.24 µg ml−1); ethambutol (MIC, 7.64 µg ml−1).
bCytotoxicity at 50 µg ml−1 (RAW 264.7 cells).
List of tuberculosis targets and mechanistic pathway class.
| PDB ID | name of targets | class |
|---|---|---|
| 1G3U | thymidylate kinase | DNA synthesis |
| 1W19 | 6,7-dimethyl-8-ribityllumazine synthase | cofactor biosynthesis |
| 1ZID | enoyl-acyl carrier protein | mycolic acid biosynthesis |
| 2OZ5 | MTB phosphotyrosine phosphatase B | arrest of phagosome maturation |
| 3IUB | pantothenate synthetase | β-alanine metabolism |
| 1DG5 | dihydrofolate reductase | folate metabolism |
Molecular docking analysis of 6 protein targets with selected compounds. The binding energy was calculated for Glide in kcal mol−1.
| Glide score binding energy (kcal mol−1) | ||||
|---|---|---|---|---|
| PDB target | compound | compound | compound | compound |
| 1G3U | −6.551 | −6.782 | −5.617 | −5.912 |
| 1W19 | −6.852 | −4.880 | −4.165 | −5.600 |
| 1ZID | −7.826 | −9.189 | −7.316 | −11.123 |
| 2OZ5 | −6.899 | −7.344 | −5.572 | −7.967 |
| 3IUB | −6.600 | −6.602 | −5.104 | −5.291 |
| 1DG5 | −4.521 | −4.793 | −4.475 | −6.233 |
Molecular docking analysis of selected compounds.
| protein target | compound name | amino acids involved in intermolecular interactions | binding energy (kcal mol−1) |
|---|---|---|---|
| 1ZID | compound | Thr196 | −7.826 |
| Phe149 | |||
| compound | Met98 | −9.189 | |
| Arg32 | |||
| Asp64 | |||
| Trp222 | |||
| Tyr158 | |||
| compound | Thr196 | −7.316 |
Figure 2.Amino acids involved in intermolecular interactions.
Figure 3.(a) Compound 6s (in magenta) in enoyl-acyl carrier protein (PDB ID:1ZID). (b) Alignment of compound 6s in the binding pocket.
Chemoinformatics analysis.
| compounds | ||||||
|---|---|---|---|---|---|---|
| properties | ||||||
| molecular weight | 359.429 | 333.347 | 389.455 | 283.331 | 295.342 | 453.627 |
| HB accept | 3 | 4 | 4 | 3 | 3 | 4 |
| HB donor | 0 | 0 | 0 | 0 | 0 | 1 |
| LogP | 3.335 | 1.792 | 3.631 | 1.533 | 1.409 | 5.188 |
| Weiner patha | 2075 | 1661 | 2737 | 1015 | 1117 | 4787 |
| ring counta | 4 | 4 | 8 | 5 | 3 | 17 |
| PDL/PLLa | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 |
| BBB (−3.0–1.2)b | 2.88269 | 1.161 | 0.23527 | 0.5112 | 0.36551 | 1.14616 |
| CaCo2 (nms) (<25, poor, >500, best)b | 34.0619 | 23.231 | 32.9739 | 25.026 | 16.0711 | 39.8231 |
| HIA (50–100%)b | 97.41 | 97.16 | 97.72 | 98.34 | 98.27 | 96.48 |
| rotatable bonds (0–15)a | 4 | 4 | 8 | 5 | 3 | 17 |
| TPSA (7.0–200.0)b | 57.01 | 66.24 | 66.24 | 57.01 | 57.01 | 77.24 |
| DSSTox carcinogenic potency mutagenecity | Neg. | Neg. | Neg. | Neg. | Neg. | Neg. |
| ( | ( | ( | ( | ( | ( | |
| DSSTox carcinogenic potency mouse | Neg. | Neg. | Neg. | Neg. | Neg. | Neg. |
| ( | ( | ( | ( | ( | ( | |
aComputed using Screening Assistant 2 program. PDL, progressive drug like; PLL, progressive lead like.
bPreADMET software.
cLAZAR wherein Neg., negative and p, probability value.