Literature DB >> 29751021

A new era of virus bioinformatics.

Bashar Ibrahim1, Dino P McMahon2, Franziska Hufsky1, Martin Beer3, Li Deng4, Philippe Le Mercier5, Massimo Palmarini6, Volker Thiel7, Manja Marz8.   

Abstract

Despite the recognized excellence of virology and bioinformatics, these two communities have interacted surprisingly sporadically, aside from some pioneering work on HIV-1 and influenza. Bringing together the expertise of bioinformaticians and virologists is crucial, since very specific but fundamental computational approaches are required for virus research, particularly in an era of big data. Collaboration between virologists and bioinformaticians is necessary to improve existing analytical tools, cloud-based systems, computational resources, data sharing approaches, new diagnostic tools, and bioinformatic training. Here, we highlight current progress and discuss potential avenues for future developments in this promising era of virus bioinformatics. We end by presenting an overview of current technologies, and by outlining some of the major challenges and advantages that bioinformatics will bring to the field of virology.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Bioinformatics; Software; Virology; Viruses

Mesh:

Year:  2018        PMID: 29751021     DOI: 10.1016/j.virusres.2018.05.009

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  14 in total

1.  Improving risk assessment of the emergence of novel influenza A viruses by incorporating environmental surveillance.

Authors:  Kim M Pepin; Matthew W Hopken; Susan A Shriner; Erica Spackman; Zaid Abdo; Colin Parrish; Steven Riley; James O Lloyd-Smith; Antoinette J Piaggio
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-08-12       Impact factor: 6.237

2.  Databases, Knowledgebases, and Software Tools for Virus Informatics.

Authors:  Yuxin Lin; Yulan Qian; Xin Qi; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

3.  Proteolytic cleavage of host proteins by the Group IV viral proteases of Venezuelan equine encephalitis virus and Zika virus.

Authors:  Elaine M Morazzani; Jaimee R Compton; Dagmar H Leary; Angela V Berry; Xin Hu; Juan J Marugan; Pamela J Glass; Patricia M Legler
Journal:  Antiviral Res       Date:  2019-02-10       Impact factor: 10.103

4.  Origin and evolution of emerging Liao ning Virus (genus Seadornavirus, family Reoviridae).

Authors:  Jun Zhang; Hong Liu; Jiahui Wang; Jiheng Wang; Jianming Zhang; Jiayue Wang; Xin Zhang; Hongfang Ji; Zhongfeng Ding; Han Xia; Chunyang Zhang; Qian Zhao; Guodong Liang
Journal:  Virol J       Date:  2020-07-14       Impact factor: 4.099

5.  The Third Annual Meeting of the European Virus Bioinformatics Center.

Authors:  Franziska Hufsky; Bashar Ibrahim; Sejal Modha; Martha R J Clokie; Stefanie Deinhardt-Emmer; Bas E Dutilh; Samantha Lycett; Peter Simmonds; Volker Thiel; Aare Abroi; Evelien M Adriaenssens; Marina Escalera-Zamudio; Jenna Nicole Kelly; Kevin Lamkiewicz; Lu Lu; Julian Susat; Thomas Sicheritz; David L Robertson; Manja Marz
Journal:  Viruses       Date:  2019-05-05       Impact factor: 5.048

6.  Interpreting Viral Deep Sequencing Data with GLUE.

Authors:  Joshua B Singer; Emma C Thomson; Joseph Hughes; Elihu Aranday-Cortes; John McLauchlan; Ana da Silva Filipe; Lily Tong; Carmen F Manso; Robert J Gifford; David L Robertson; Eleanor Barnes; M Azim Ansari; Jean L Mbisa; David F Bibby; Daniel Bradshaw; David Smith
Journal:  Viruses       Date:  2019-04-03       Impact factor: 5.048

7.  The International Virus Bioinformatics Meeting 2020.

Authors:  Franziska Hufsky; Niko Beerenwinkel; Irmtraud M Meyer; Simon Roux; Georgia May Cook; Cormac M Kinsella; Kevin Lamkiewicz; Mike Marquet; David F Nieuwenhuijse; Ingrida Olendraite; Sofia Paraskevopoulou; Francesca Young; Ronald Dijkman; Bashar Ibrahim; Jenna Kelly; Philippe Le Mercier; Manja Marz; Alban Ramette; Volker Thiel
Journal:  Viruses       Date:  2020-12-06       Impact factor: 5.048

8.  Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

Authors:  Bashar Ibrahim; Ksenia Arkhipova; Arno C Andeweg; Susana Posada-Céspedes; François Enault; Arthur Gruber; Eugene V Koonin; Anne Kupczok; Philippe Lemey; Alice C McHardy; Dino P McMahon; Brett E Pickett; David L Robertson; Richard H Scheuermann; Alexandra Zhernakova; Mark P Zwart; Alexander Schönhuth; Bas E Dutilh; Manja Marz
Journal:  Viruses       Date:  2018-05-14       Impact factor: 5.048

9.  On the interactions of the receptor-binding domain of SARS-CoV-1 and SARS-CoV-2 spike proteins with monoclonal antibodies and the receptor ACE2.

Authors:  Carolina Corrêa Giron; Aatto Laaksonen; Fernando L Barroso da Silva
Journal:  Virus Res       Date:  2020-05-15       Impact factor: 3.303

10.  Up State of the SARS-COV-2 Spike Homotrimer Favors an Increased Virulence for New Variants.

Authors:  Carolina Corrêa Giron; Aatto Laaksonen; Fernando Luís Barroso da Silva
Journal:  Front Med Technol       Date:  2021-06-30
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.