Literature DB >> 29750373

Current state-of-art of STR sequencing in forensic genetics.

Antonio Alonso1, Pedro Alberto Barrio1, Petra Müller2, Steffi Köcher3, Burkhard Berger2, Pablo Martin1, Martin Bodner2, Sascha Willuweit3, Walther Parson2,4, Lutz Roewer3, Bruce Budowle5.   

Abstract

The current state of validation and implementation strategies of massively parallel sequencing (MPS) technology for the analysis of STR markers for forensic genetics use is described, covering the topics of the current catalog of commercial MPS-STR panels, leading MPS-platforms, and MPS-STR data analysis tools. In addition, the developmental and internal validation studies carried out to date to evaluate reliability, sensitivity, mixture analysis, concordance, and the ability to analyze challenged samples are summarized. The results of various MPS-STR population studies that showed a large number of new STR sequence variants that increase the power of discrimination in several forensically relevant loci are also presented. Finally, various initiatives developed by several international projects and standardization (or guidelines) groups to facilitate application of MPS technology for STR marker analyses are discussed in regard to promoting a standard STR sequence nomenclature, performing population studies to detect sequence variants, and developing a universal system to translate sequence variants into a simple STR nomenclature (numbers and letters) compatible with national STR databases.
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Capillary electrophoresis; Forensic genetics; Massively parallel sequencing; Short tandem repeats; Validation studies

Mesh:

Substances:

Year:  2018        PMID: 29750373     DOI: 10.1002/elps.201800030

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  10 in total

1.  Evaluation genotypes of cancer cell lines HCC1954 and SiHa by short tandem repeat (STR) analysis and DNA sequencing.

Authors:  Jiewen Fu; Jingliang Cheng; Xiaoyan Liu; Jun Li; Chunli Wei; Xiaoli Zheng; Tao He; Junjiang Fu
Journal:  Mol Biol Rep       Date:  2018-11-02       Impact factor: 2.316

2.  Report from the STRAND Working Group on the 2019 STR sequence nomenclature meeting.

Authors:  Katherine Butler Gettings; David Ballard; Martin Bodner; Lisa A Borsuk; Jonathan L King; Walther Parson; Christopher Phillips
Journal:  Forensic Sci Int Genet       Date:  2019-09-21       Impact factor: 4.882

3.  The forensic landscape and the population genetic analyses of Hainan Li based on massively parallel sequencing DNA profiling.

Authors:  Haoliang Fan; Zhengming Du; Fenfen Wang; Xiao Wang; Shao-Qing Wen; Lingxiang Wang; Panxin Du; Hai Liu; Shengping Cao; Zhenming Luo; Bingbing Han; Peiyu Huang; Bofeng Zhu; Pingming Qiu
Journal:  Int J Legal Med       Date:  2021-04-13       Impact factor: 2.686

Review 4.  PCR inhibition in qPCR, dPCR and MPS-mechanisms and solutions.

Authors:  Maja Sidstedt; Peter Rådström; Johannes Hedman
Journal:  Anal Bioanal Chem       Date:  2020-02-12       Impact factor: 4.142

Review 5.  Interpol review of forensic biology and forensic DNA typing 2016-2019.

Authors:  John M Butler; Sheila Willis
Journal:  Forensic Sci Int       Date:  2020-02-20       Impact factor: 2.395

6.  Massively parallel sequencing of 25 autosomal STRs including SE33 in four population groups for forensic applications.

Authors:  Ye-Lim Kwon; Bo Min Kim; Eun Young Lee; Kyoung-Jin Shin
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.379

7.  Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS).

Authors:  Hirak Ranjan Dash; Kamlesh Kaitholia; R K Kumawat; Anil Kumar Singh; Pankaj Shrivastava; Gyaneshwer Chaubey; Surajit Das
Journal:  Sci Rep       Date:  2021-12-01       Impact factor: 4.379

8.  Exploring STR sequencing for forensic DNA intelligence databasing using the Austrian National DNA Database as an example.

Authors:  Petra Hölzl-Müller; Martin Bodner; Burkhard Berger; Walther Parson
Journal:  Int J Legal Med       Date:  2021-08-26       Impact factor: 2.686

Review 9.  An Introductory Overview of Open-Source and Commercial Software Options for the Analysis of Forensic Sequencing Data.

Authors:  Tunde I Huszar; Katherine B Gettings; Peter M Vallone
Journal:  Genes (Basel)       Date:  2021-10-29       Impact factor: 4.096

10.  CSYseq: The first Y-chromosome sequencing tool typing a large number of Y-SNPs and Y-STRs to unravel worldwide human population genetics.

Authors:  Sofie Claerhout; Paulien Verstraete; Liesbeth Warnez; Simon Vanpaemel; Maarten Larmuseau; Ronny Decorte
Journal:  PLoS Genet       Date:  2021-09-07       Impact factor: 5.917

  10 in total

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