| Literature DB >> 29750162 |
Peng Deng1, Jianchun Zeng2, Jie Li2, Wenjun Feng2, Jinlun Chen2, Yirong Zeng2.
Abstract
Avascular necrosis of the femoral head (ANFH) is an a frequently occurring orthopaedic disease with high morbidity. Traditional Chinese Medicine (TCM) Yuanshi Shengmai Chenggu Tablet is a valid prescription for treating steroid-induced femoral head necrosis. However, there are rare investigations about the serum protein marker expression after the acting of drugs on hormone and TCM. In the present study, we aimed to systematically discover and validate the serum biomarkers expression difference in patients with steroid-induced avascular necrosis of femoral head (SANFH) after taking Yuanshi Shengmai Chenggu Tablets (SANFH-TCM), so as to reveal the action mechanism of TCM from the molecular level by using isobaric tags for relative and absolute quantification (iTRAQ) with multiple reaction monitoring quantification. Significant differences in fibrinogen alpha, fibrinogen beta, fibrinogen gamma, fibronectin, C-reactive protein, apolipoprotein A, apolipoprotein D, and apolipoprotein E were found among SANFH, SANFH-TCM, and healthy controls. Therefore, our study proposes potential biomarkers for SANFH diagnosis and for the prognosis of femoral head necrosis after Traditional Chinese Medicine treatment.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29750162 PMCID: PMC5884301 DOI: 10.1155/2018/5692735
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Demographic characteristics.
| In Total | 26 |
|---|---|
| Male, | 11 (42.3) |
| Age, yr, mean ± SD | 39.5 ± 5.3 |
| History of SONFH, months, median (min, max) | 23.1 (6, 34) |
| Primary disease, | |
| Systemic lupus erythematosus | 13 (50.0) |
| Anaphylactoid purpura | 5 (19.2) |
| Eczema | 4 (15.4) |
| Psoriasis | 2 (7.7) |
| Thrombocytopenic purpura | 1 (3.8) |
| Fever of unknown origin | 1 (3.8) |
Differentially expressed protein between SANFH and healthy controls.
| Accession | Description |
| Ratio (mean) |
|---|---|---|---|
|
| |||
| P0DJI9 | Serum amyloid A-2 protein | 0.0000233 | 4.57402273 |
| P01714 | Ig lambda chain V-III region SH | 0.000116405 | 2.64233333 |
| P13637 | Sodium/potassium-transporting ATPase subunit alpha-3 | 0.010160416 | 2.06683333 |
| O75746 | Calcium-binding mitochondrial carrier protein Aralar1 | 0.008612823 | 1.95325 |
| P01613 | Ig kappa chain V-I region Ni | 0.005619256 | 1.94854167 |
| P01743 | Ig heavy chain V-I region HG3 | 0.00017147 | 1.93190909 |
| P01742 | Ig heavy chain V-I region EU | 1.61 | 1.8255 |
| P0DJI8 | Serum amyloid A-1 protein | 0.000000019 | 1.72607353 |
| P01857 | Ig gamma-1 chain C region | 2.12 | 1.71611466 |
| P01861 | Ig gamma-4 chain C region | 0.00000135 | 1.66788889 |
| P06889 | Ig lambda chain V-IV region MOL | 0.0000383 | 1.59966667 |
| P01860 | Ig gamma-3 chain C region | 6.59 | 1.59404098 |
| P02741 | C-reactive protein | 6.38 | 1.58455808 |
| Q8NBJ4 | Golgi membrane protein 1 | 0.000564362 | 1.4622 |
| P0C0L4 | Complement C4-A | 1.33 | 1.45864286 |
| P12235 | ADP/ATP translocase 1 | 0.016291795 | 1.4491 |
| P06576 | ATP synthase subunit beta, mitochondrial | 0.002154497 | 1.43466667 |
| P13645 | Keratin, type I cytoskeletal 10 | 4.63 | 1.41348333 |
| P04433 | Ig kappa chain V-III region VG (Fragment) | 0.000000732 | 1.412 |
| Q08380 | Galectin-3-binding protein | 3.33 | 1.38927444 |
| Q14624 | Inter-alpha-trypsin inhibitor heavy chain H4 | 6.37 | 1.37619099 |
| P22692 | Insulin-like growth factor-binding protein 4 | 0.025918263 | 1.362 |
| P01620 | Ig kappa chain V-III region SIE | 8.22 | 1.3591875 |
| P02452 | Collagen alpha-1(I) chain | 1.95 | 1.3503 |
| O75636 | Ficolin-3 | 2.26 | 1.341312 |
| P01717 | Ig lambda chain V-IV region Hil | 0.003213417 | 1.3341 |
| P14625 | Endoplasmin | 0.00000523 | 1.3105 |
| P01621 | Ig kappa chain V-III region NG9 (Fragment) | 0.000190716 | 1.2999 |
| P51884 | Lumican | 0.002279512 | 1.29618421 |
| P02747 | Complement C1q subcomponent subunit C | 1.85 | 1.290775 |
| P25705 | ATP synthase subunit alpha, mitochondrial | 0.00000765 | 1.28091667 |
| P22792 | Carboxypeptidase N subunit 2 | 7.1 | 1.27185227 |
| P09543 | 2′,3′-Cyclic-nucleotide 3′-phosphodiesterase | 0.034218978 | 1.2625 |
| P18428 | Lipopolysaccharide-binding protein | 2.71 | 1.25414706 |
| P01009 | Alpha-1-antitrypsin | 6.68 | 1.21782482 |
|
| |||
| P01781 | Ig heavy chain V-III region GAL | 0.00000597 | 0.82966667 |
| O43852 | Calumenin | 0.000374747 | 0.82916667 |
| Q9UK55 | Protein Z-dependent protease inhibitor | 2.62 | 0.82908108 |
| O43866 | CD5 antigen-like | 1.19 | 0.82744578 |
| Q04756 | Hepatocyte growth factor activator | 0.000530289 | 0.821 |
| P63104 | 14-3-3 protein zeta/delta | 0.009022339 | 0.8194 |
| Q68CQ4 | Digestive organ expansion factor homolog | 0.000458581 | 0.81775 |
| P68366 | Tubulin alpha-4A chain | 0.003314178 | 0.8143 |
| P04211 | Ig lambda chain V region 4A | 0.021633191 | 0.812 |
| Q6Q788 | Apolipoprotein A-V | 0.000000051 | 0.8107381 |
| P59665 | Neutrophil defensin 1 | 0.011081692 | 0.7993 |
| P05164 | Myeloperoxidase | 0.001604817 | 0.7984 |
| P02649 | Apolipoprotein E | 5.01 | 0.7911827 |
| P04070 | Vitamin K-dependent protein C | 1.41 | 0.78128922 |
| Q13103 | Secreted phosphoprotein 24 | 9.56 | 0.76858333 |
| P02749 | beta-2-Glycoprotein 1 | 0.015081278 | 0.7567 |
| P01591 | Immunoglobulin J chain | 2.38 | 0.75358772 |
| P36980 | Complement factor H-related protein 2 | 0.000968476 | 0.75325 |
| P04220 | Ig mu heavy chain disease protein | 0.047631742 | 0.74433333 |
| P01871 | Ig mu chain C region | 2.52 | 0.72098342 |
| Q71U36 | Tubulin alpha-1A chain | 0.005388449 | 0.716 |
| P62158 | Calmodulin | 0.002744078 | 0.63166667 |
| P67936 | Tropomyosin alpha-4 chain | 0.002042575 | 0.62 |
| P08519 | Apolipoprotein(a) | 1.36 | 0.606 |
| P35527 | Keratin, type I cytoskeletal 9 | 1.13 | 0.57923077 |
| P27918 | Properdin | 2.97 | 0.57908333 |
Differentially expressed protein between SANFH-TCM and healthy controls.
| Accession | Description |
| Ratio (mean) |
|---|---|---|---|
|
| |||
| Q9NP78 | ATP-binding cassette subfamily B member 9 | 8.47 | 17.47338 |
| P02671 | Fibrinogen alpha chain | 0 | 13.049 |
| P02679 | Fibrinogen gamma chain | 0 | 12.66544 |
| P02675 | Fibrinogen beta chain | 0 | 12.11164 |
| Q86XH1 | IQ and AAA domain-containing protein 1 | 0.000199 | 8.9745 |
| P01019 | Angiotensinogen | 9.49 | 2.256 |
| Q68CQ4 | Digestive organ expansion factor homolog | 0.000267 | 1.882 |
| P03950 | Angiogenin | 4.8 | 1.7776 |
| P13637 | Sodium/potassium-transporting ATPase subunit alpha-3 | 0.017893 | 1.742833 |
| Q8WXD2 | Secretogranin-3 | 1.34 | 1.71675 |
| P06396 | Gelsolin | 3.3 | 1.659898 |
| Q8NBJ4 | Golgi membrane protein 1 | 7.61 | 1.6227 |
| Q96KN2 | Beta-Ala-His dipeptidase | 1.18 | 1.588538 |
| P02775 | Platelet basic protein | 1.22 | 1.544688 |
| P06727 | Apolipoprotein A-IV | 0 | 1.529316 |
| P01023 | Alpha-2-macroglobulin | 1.85 | 1.506488 |
| Q14624 | Inter-alpha-trypsin inhibitor heavy chain H4 | 4.2 | 1.503549 |
| P02776 | Platelet factor 4 | 1.49 | 1.487591 |
| Q7Z2Y8 | Interferon-induced very large GTPase 1 | 0.047372 | 1.4735 |
| P29122 | Proprotein convertase subtilisin/kexin type 6 | 0.002827 | 1.47275 |
| P05154 | Plasma serine protease inhibitor | 1.09 | 1.446654 |
| P14618 | Pyruvate kinase PKM | 0.005908 | 1.444167 |
| P06889 | Ig lambda chain V-IV region MOL | 9.86 | 1.4295 |
| P01857 | Ig gamma-1 chain C region | 4 | 1.427066 |
| P22792 | Carboxypeptidase N subunit 2 | 3.39 | 1.348591 |
| P01742 | Ig heavy chain V-I region EU | 3.44 | 1.343614 |
| P05090 | Apolipoprotein D | 1.43 | 1.330211 |
| P51884 | Lumican | 6.82 | 1.323868 |
| P01613 | Ig kappa chain V-I region Ni | 6.17 | 1.319958 |
| P01860 | Ig gamma-3 chain C region | 4.37 | 1.318262 |
| P14625 | Endoplasmin | 0.000738 | 1.3125 |
| Q04756 | Hepatocyte growth factor activator | 4.34 | 1.312333 |
| P80108 | Phosphatidylinositol-glycan-specific phospholipase D | 6.28 | 1.309714 |
| P02787 | Serotransferrin | 0.03443 | 1.2721 |
| P00450 | Ceruloplasmin | 1.43 | 1.269935 |
| P10720 | Platelet factor 4 variant | 1.65 | 1.255714 |
| P80748 | Ig lambda chain V-III region LOI | 0.003 | 1.24625 |
| P01009 | Alpha-1-antitrypsin | 6.2 | 1.245105 |
| Q9NP79 | Coagulation factor XII | 0.001987 | 1.24225 |
| P02671 | Retinoic acid receptor responder protein 2 | 0.008513 | 1.234583 |
| P02679 | Ig kappa chain V-II region TEW | 0.024594 | 1.226038 |
| P02675 | Kallistatin | 0.016269 | 1.223857 |
| Q86XH2 | Complement C1q subcomponent subunit A | 8.72 | 1.222116 |
| P01020 | FERM and PDZ domain-containing protein 1 | 2.36 | 1.212885 |
| Q68CQ5 | Retinol-binding protein 4 | 4.81 | 1.2112 |
|
| |||
| Q02818 | Nucleobindin-1 | 0.002012 | 0.8295 |
| Q9UK55 | Protein Z-dependent protease inhibitor | 2.62 | 0.829081 |
| P02656 | Apolipoprotein C-III | 3.32 | 0.823015 |
| P62258 | 14-3-3 protein epsilon | 0.04376 | 0.81975 |
| P01877 | Ig alpha-2 chain C region | 0.024488 | 0.817692 |
| Q6Q788 | Apolipoprotein A-V | 5.25 | 0.81769 |
| P36980 | Complement factor H-related protein 2 | 0.001599 | 0.815458 |
| P35542 | Serum amyloid A-4 protein | 2.65 | 0.813253 |
| P01620 | Ig kappa chain V-III region SIE | 1.42 | 0.800375 |
| O14818 | Proteasome subunit alpha type-7 | 0.024316 | 0.794833 |
| P18428 | Lipopolysaccharide-binding protein | 4.26 | 0.789371 |
| P04438 | Ig heavy chain V-II region SESS | 0.044412 | 0.78775 |
| P49721 | Proteasome subunit beta type-2 | 0.026571 | 0.7765 |
| P04196 | Histidine-rich glycoprotein | 6.01 | 0.775008 |
| P02649 | Apolipoprotein E | 0 | 0.75853 |
| Q86UD1 | Out at first protein homolog | 7.29 | 0.755267 |
| P04211 | Ig lambda chain V region 4A | 1.19 | 0.751667 |
| P0DJI9 | Serum amyloid A-2 protein | 7.71 | 0.744667 |
| P67936 | Tropomyosin alpha-4 chain | 0.0005 | 0.74375 |
| Q8NDV3 | Structural maintenance of chromosomes protein 1B | 0.000726 | 0.741833 |
| P62158 | Calmodulin | 0.005327 | 0.733667 |
| Q16610 | Extracellular matrix protein 1 | 5.58 | 0.731882 |
| Q92954 | Proteoglycan 4 | 7.15 | 0.728857 |
| P59665 | Neutrophil defensin 1 | 0.000151 | 0.7177 |
| P20742 | Pregnancy zone protein | 4.88 | 0.696948 |
| P02741 | C-reactive protein | 2.7 | 0.677154 |
| Q71U36 | Tubulin alpha-1A chain | 0.000833 | 0.657333 |
| P02751 | Fibronectin | 0 | 0.635439 |
| P08519 | Apolipoprotein(a) | 7.96 | 0.56335 |
Differentially expressed protein between SANFH-TCM and SANFH.
| Accession | Description |
| Ratio (mean) |
|---|---|---|---|
|
| |||
| Q9NP78 | ATP-binding cassette sub-family B member 9 | 7.38 | 21.82029412 |
| Q86XH1 | IQ and AAA domain-containing protein 1 | 0.000343733 | 13.86725 |
| P02671 | Fibrinogen alpha chain | 0 | 13.65918665 |
| P02675 | Fibrinogen beta chain | 0 | 13.64325401 |
| P02679 | Fibrinogen gamma chain | 0 | 13.23321597 |
| P01019 | Angiotensinogen | 0.000000129 | 2.391730769 |
| Q68CQ4 | Digestive organ expansion factor homolog | 0.0000351 | 2.26525 |
| P03950 | Angiogenin | 0.00000196 | 2.0039 |
| P35527 | Keratin, type I cytoskeletal 9 | 3.95 | 1.928576923 |
| Q8WXD2 | Secretogranin-3 | 0.000728124 | 1.91025 |
| P27918 | Properdin | 1.39 | 1.763869048 |
| P14618 | Pyruvate kinase PKM | 0.002960903 | 1.632333333 |
| P05154 | Plasma serine protease inhibitor | 2.03 | 1.607923077 |
| Q04756 | Hepatocyte growth factor activator | 2.81 | 1.590333333 |
| P02775 | Platelet basic protein | 2.34 | 1.56775 |
| P02776 | Platelet factor 4 | 3.43 | 1.559232955 |
| P02749 | Beta-2-glycoprotein 1 | 0.0000322 | 1.548 |
| Q96KN2 | Beta-Ala-His dipeptidase | 0.0000169 | 1.533115385 |
| P01023 | Alpha-2-macroglobulin | 1.1 | 1.519228916 |
| P06727 | Apolipoprotein A-IV | 0 | 1.4910721 |
| P06396 | Gelsolin | 7.08 | 1.485481481 |
| P01769 | Ig heavy chain V-III region GA | 0.009729195 | 1.45675 |
| P10720 | Platelet factor 4 variant | 0.000000465 | 1.450190476 |
| P05090 | Apolipoprotein D | 5.92 | 1.385849624 |
| P19823 | Inter-alpha-trypsin inhibitor heavy chain H2 | 1.59 | 1.376936508 |
| P01871 | Ig mu chain C region | 1.12 | 1.37344898 |
| P01616 | Ig kappa chain V-II region MIL | 0.004694041 | 1.35375 |
| P34096 | Ribonuclease 4 | 0.016807995 | 1.3485 |
| P29122 | Proprotein convertase subtilisin/kexin type 6 | 0.007174928 | 1.3275 |
| P80108 | Phosphatidylinositol-glycan-specific phospholipase D | 1.54 | 1.320666667 |
| P55056 | Apolipoprotein C-IV | 0.0000081 | 1.3169 |
| O95445 | Apolipoprotein M | 0.00000275 | 1.314954545 |
| Q9UHG3 | Prenylcysteine oxidase 1 | 0.00000266 | 1.305045455 |
| P08603 | Complement factor H | 8.17 | 1.296578143 |
| P02787 | Serotransferrin | 0.002337342 | 1.2947 |
| P05164 | Myeloperoxidase | 0.020349711 | 1.282 |
| Q8WWA0 | Intelectin-1 | 0.0000227 | 1.2735 |
| P29622 | Kallistatin | 0.0000069 | 1.267285714 |
| Q9NP79 | Immunoglobulin J chain | 4.06 | 1.260973684 |
| Q86XH2 | CD5 antigen-like | 3 | 1.248355422 |
| P02671 | Plasma kallikrein | 6.95 | 1.236383333 |
| P02675 | Serum amyloid P-component | 1.03 | 1.236112319 |
| P02679 | Inter-alpha-trypsin inhibitor heavy chain H1 | 1.7 | 1.230389423 |
| P01019 | Alpha-actinin-4 | 0.045621384 | 1.23 |
|
| |||
| P04217 | Alpha-1B-glycoprotein | 0.0000256 | 0.826346154 |
| P01613 | Ig kappa chain V-I region Ni | 0.010289928 | 0.825583333 |
| Q16610 | Extracellular matrix protein 1 | 0.000000945 | 0.821529412 |
| Q92954 | Proteoglycan 4 | 1.05 | 0.8145 |
| Q02818 | Nucleobindin-1 | 0.000247875 | 0.813125 |
| P01742 | Ig heavy chain V-I region EU | 1.22 | 0.803428571 |
| P04434 | Ig kappa chain V-III region VH (Fragment) | 0.030092513 | 0.802166667 |
| P55774 | C-C motif chemokine 18 | 0.003307656 | 0.79825 |
| Q9HDC9 | Adipocyte plasma membrane-associated protein | 0.00000847 | 0.798083333 |
| P01011 | Alpha-1-antichymotrypsin | 7.56 | 0.796217391 |
| P01621 | Ig kappa chain V-III region NG9 (Fragment) | 0.0000675 | 0.795 |
| P01717 | Ig lambda chain V-IV region Hil | 0.0000608 | 0.78905 |
| P04196 | Histidine-rich glycoprotein | 2.81 | 0.783991667 |
| P04433 | Ig kappa chain V-III region VG (Fragment) | 0.00000651 | 0.783357143 |
| P35542 | Serum amyloid A-4 protein | 1.77 | 0.752563218 |
| P0DJI8 | Serum amyloid A-1 protein | 4.33 | 0.748036765 |
| P27824 | Calnexin | 0.038086684 | 0.73825 |
| P00740 | Coagulation factor IX | 6.16 | 0.733622222 |
| Q9UGM5 | Fetuin-B | 0.00451302 | 0.721833333 |
| P0C0L4 | Complement C4-A | 4.74 | 0.71725 |
| Q08380 | Galectin-3-binding protein | 9.69 | 0.713721805 |
| P04438 | Ig heavy chain V-II region SESS | 0.039314686 | 0.70425 |
| P20742 | Pregnancy zone protein | 9.73 | 0.698695238 |
| P13645 | Keratin, type I cytoskeletal 10 | 1.17 | 0.69635 |
| Q86UD1 | Out at first protein homolog | 3.02 | 0.694666667 |
| P02751 | Fibronectin | 0 | 0.692870958 |
| P04208 | Ig lambda chain V-I region WAH | 0.000226793 | 0.6685 |
| P01861 | Ig gamma-4 chain C region | 2.47 | 0.655777778 |
| P18428 | Lipopolysaccharide-binding protein | 5.83 | 0.640994118 |
| P49721 | Proteasome subunit beta type-2 | 0.019809794 | 0.6185 |
| P25789 | Proteasome subunit alpha type-4 | 0.00601102 | 0.609 |
| P01743 | Ig heavy chain V-I region HG3 | 0.0000275 | 0.607136364 |
| P01620 | Ig kappa chain V-III region SIE | 1.87 | 0.5894375 |
| P02452 | Collagen alpha-1(I) chain | 0.000916641 | 0.4901 |
| P02741 | C-reactive protein | 1.19 | 0.445641414 |
| P01714 | Ig lambda chain V-III region SH | 1.91 | 0.442666667 |
| P0DJI9 | Serum amyloid A-2 protein | 1.16 | 0.424595238 |
Figure 1MRM quantification of results obtained from iTRAQ proteomics. MRM was performed to verify the different expressions of selected proteins including fibrinogen alpha, fibrinogen beta, and fibrinogen gamma, fibronectin, apolipoprotein A (LPA), apolipoprotein D (LPD), and apolipoprotein E (LPD), and C-reaction protein in SANFH versus healthy controls, SANFH-TCM versus healthy controls, and SANFH-TCM versus SANFH.
MRM was performed to verify the results obtained from iTRAQ proteomics.
| Accession number | Description | Relative protein abundance (MRM) | Relative protein abundance (iTRAQ) | ||||
|---|---|---|---|---|---|---|---|
| SANFH versus healthy controls | SANFH-TCM versus healthy controls | SANFH-TCM versus SANFH | SANFH versus healthy controls | SANFH-TCM versus healthy controls | SANFH- TCM versus SANFH | ||
| P02671 | Fibrinogen alpha | 1.8493 | 62.3799 | 33.7321 | 0.95 | 7.502 | 7.849 |
| P02675 | Fibrinogen beta | 3.2104 | 143.2262 | 44.6126 | 0.936 | 5.8 | 6.161 |
| P02679 | Fibrinogen gamma | 1.7341 | 79.1554 | 45.6467 | 0.953 | 6.721 | 6.766 |
| P02751 | Fibronectin | 0.8527 | 0.3081 | 0.3614 | 0.999 | 0.568 | 0.571 |
| P02741 | C-reactive protein | 2.2723 | 0.522 | 0.2297 | 1.559 | 0.658 | 0.412 |
| P06727 | Apolipoprotein A | 1.2723 | 1.8632 | 1.4644 | 1.06 | 1.532 | 1.45 |
| P05090 | Apolipoprotein D | 0.9796 | 1.4369 | 1.4668 | 0.932 | 1.302 | 1.341 |
| P02649 | Apolipoprotein E | 0.6693 | 0.6865 | 1.0257 | 0.759 | 0.713 | 0.934 |
Figure 2GO analysis of differentially expressed proteins between SANFH and healthy controls. The significantly enriched GO terms concerning biological process, cellular component, and molecular function were shown.
Figure 3GO analysis of differentially expressed proteins between SANFH-TCM and healthy controls. The significantly enriched GO terms concerning biological process, cellular component and molecular function were shown.
Figure 4GO analysis of differentially expressed proteins between SANFH-TCM and SANFH. The significantly enriched GO terms concerning biological process, cellular component, and molecular function were shown.
Differently enriched pathways were obtained in SANFH versus healthy controls.
| Pathway_acc | Pathway_Name |
| Protein in Background | Protein in Diff Exp | Protein list |
|---|---|---|---|---|---|
| hsa05010 | Alzheimer's disease | 0.015362 | 7 | 4 | P25705, |
| hsa04970 | Salivary secretion | 0.032411 | 5 | 3 | P62158, P04220, P13637, |
| hsa05016 | Huntington's disease | 0.057318 | 6 | 3 | P25705, P12235, P06576, |
| hsa05012 | Parkinson's disease | 0.057318 | 6 | 3 | P25705, P12235, P06576, |
| hsa00190 | Oxidative phosphorylation | 0.070274 | 3 | 2 | P25705, P06576, |
| hsa04261 | Adrenergic signaling in cardiomyocytes | 0.088785 | 7 | 3 | P67936, P62158, P13637, |
| hsa04915 | Estrogen signaling pathway | 0.125873 | 4 | 2 | P62158, P14625, |
| hsa04020 | Calcium signaling pathway | 0.125873 | 4 | 2 | P12235, P62158, |
| hsa04974 | Protein digestion and absorption | 0.125873 | 4 | 2 | P13637, P02452, |
| hsa04260 | Cardiac muscle contraction | 0.125873 | 4 | 2 | P67936, P13637, |
| hsa04961 | Endocrine and other | 0.162907 | 1 | 1 | P13637, |
| hsa04964 | Proximal tubule bicarbonate reclamation | 0.162907 | 1 | 1 | P13637, |
| hsa04960 | Aldosterone-regulated sodium reabsorption | 0.162907 | 1 | 1 | P13637, |
| hsa04070 | Phosphatidylinositol signaling system | 0.162907 | 1 | 1 | P62158, |
| hsa04744 | Phototransduction | 0.162907 | 1 | 1 | P62158, |
| hsa04976 | Bile secretion | 0.162907 | 1 | 1 | P13637, |
| hsa05130 | Pathogenic Escherichia coli infection | 0.167478 | 9 | 3 | Q71U36, P63104, P68366, |
| hsa04918 | Thyroid hormone synthesis | 0.188181 | 5 | 2 | P14625, P13637, |
| hsa04971 | Gastric acid secretion | 0.188181 | 5 | 2 | P62158, P13637, |
| hsa04540 | Gap junction | 0.253612 | 6 | 2 | Q71U36, P68366, |
| hsa04972 | Pancreatic secretion | 0.299618 | 2 | 1 | P13637, |
| hsa04720 | Long-term potentiation | 0.299618 | 2 | 1 | P62158, |
| hsa04911 | Insulin secretion | 0.299618 | 2 | 1 | P13637, |
| hsa05214 | Glioma | 0.299618 | 2 | 1 | P62158, |
| hsa04978 | Mineral absorption | 0.299618 | 2 | 1 | P13637, |
| hsa04973 | Carbohydrate digestion and absorption | 0.299618 | 2 | 1 | P13637, |
| hsa04014 | Ras signaling pathway | 0.299618 | 2 | 1 | P62158, |
| hsa04270 | Vascular smooth muscle contraction | 0.299618 | 2 | 1 | P62158, |
| hsa04910 | Insulin signaling pathway | 0.299618 | 2 | 1 | P62158, |
| hsa05031 | Amphetamine addiction | 0.299618 | 2 | 1 | P62158, |
| hsa04750 | Inflammatory mediator regulation of TRP channels | 0.299618 | 2 | 1 | P62158, |
| hsa04912 | GnRH signaling pathway | 0.299618 | 2 | 1 | P62158, |
| hsa05152 | Tuberculosis | 0.319543 | 7 | 2 | P18428, P62158, |
| hsa05150 | Staphylococcus aureus infection | 0.334256 | 18 | 4 | P00751, P0C0L4, P13645, P02747 |
| hsa04120 | Ubiquitin mediated proteolysis | 0.357215 | 13 | 3 | P01742, P01781, P01743, |
| hsa04114 | Oocyte meiosis | 0.3841 | 8 | 2 | P63104, P62158, |
| hsa04919 | Thyroid hormone signaling pathway | 0.41429 | 3 | 1 | P13637, |
| hsa04916 | Melanogenesis | 0.41429 | 3 | 1 | P62158, |
| hsa04064 | NF-kappa B signaling pathway | 0.41429 | 3 | 1 | P18428, |
| hsa04728 | Dopaminergic synapse | 0.41429 | 3 | 1 | P62158, |
| hsa04621 | NOD-like receptor signaling pathway | 0.41429 | 3 | 1 | P14625, |
| hsa05215 | Prostate cancer | 0.41429 | 3 | 1 | P14625, |
| hsa04740 | Olfactory transduction | 0.41429 | 3 | 1 | P62158, |
| hsa04620 | Toll-like receptor signaling pathway | 0.41429 | 3 | 1 | P18428, |
| hsa04713 | Circadian entrainment | 0.41429 | 3 | 1 | P62158, |
| hsa03320 | PPAR signaling pathway | 0.445992 | 9 | 2 | P08519, Q6Q788, |
| hsa05133 | Pertussis | 0.45325 | 15 | 3 | P0C0L4, P62158, P02747, |
Note. Italic font indicated the candidate protein.
Differently enriched pathways were obtained in SANFH-TCM versus healthy controls.
| Pathway_acc | Pathway_Name |
| Protein in background | Proteins in Diff Exp | Protein list |
|---|---|---|---|---|---|
| hsa04978 | Mineral absorption | 0.034949 | 2 | 2 | P02787, P13637, |
| hsa03320 | PPAR signaling pathway | 0.068345 | 9 | 4 | P02656, P08519, Q6Q788, |
| hsa04062 | Chemokine signaling pathway | 0.083136 | 6 | 3 | P10720, P02776, P02775, |
| hsa04261 | Adrenergic signaling in cardiomyocytes | 0.126188 | 7 | 3 | P62158, P67936, P13637, |
| hsa04722 | Neurotrophin signaling pathway | 0.161789 | 4 | 2 | P62158, P62258, |
| hsa04915 | Estrogen signaling pathway | 0.161789 | 4 | 2 | P62158, P14625, |
| hsa04260 | Cardiac muscle contraction | 0.161789 | 4 | 2 | P67936, P13637, |
| hsa04114 | Oocyte meiosis | 0.17539 | 8 | 3 | P62158, P62258, Q8NDV3, |
| hsa00410 | beta-Alanine metabolism | 0.18797 | 1 | 1 | Q96KN2, |
| hsa04964 | Proximal tubule bicarbonate reclamation | 0.18797 | 1 | 1 | P13637, |
| hsa00340 | Histidine metabolism | 0.18797 | 1 | 1 | Q96KN2, |
| hsa04070 | Phosphatidylinositol signaling system | 0.18797 | 1 | 1 | P62158, |
| hsa04961 | Endocrine and other factor-regulated calcium reabsorption | 0.18797 | 1 | 1 | P13637, |
| hsa04976 | Bile secretion | 0.18797 | 1 | 1 | P13637, |
| hsa00860 | Porphyrin and chlorophyll metabolism | 0.18797 | 1 | 1 | P00450, |
| hsa00563 | Glycosylphosphatidylinositol (GPI)-anchor biosynthesis | 0.18797 | 1 | 1 | P80108, |
| hsa04960 | Aldosterone-regulated sodium reabsorption | 0.18797 | 1 | 1 | P13637, |
| hsa00230 | Purine metabolism | 0.18797 | 1 | 1 | P14618, |
| hsa04666 | Fc gamma R-mediated phagocytosis | 0.18797 | 1 | 1 | P06396, |
|
| |||||
| hsa02010 | ABC transporters | 0.18797 | 1 | 1 | Q9NP78, |
| hsa04744 | Phototransduction | 0.18797 | 1 | 1 | P62158, |
| hsa04611 | Platelet activation | 0.228912 | 9 | 3 |
|
| hsa04060 | Cytokine-cytokine receptor interaction | 0.228912 | 9 | 3 | P10720, P02776, P02775, |
| hsa04918 | Thyroid hormone synthesis | 0.23765 | 5 | 2 | P14625, P13637, |
| hsa04971 | Gastric acid secretion | 0.23765 | 5 | 2 | P62158, P13637, |
| hsa04970 | Salivary secretion | 0.23765 | 5 | 2 | P62158, P13637, |
| hsa05200 | Pathways in cancer | 0.314907 | 6 | 2 |
|
| hsa04910 | Insulin signaling pathway | 0.340991 | 2 | 1 | P62158, |
| hsa04912 | GnRH signaling pathway | 0.340991 | 2 | 1 | P62158, |
| hsa04911 | Insulin secretion | 0.340991 | 2 | 1 | P13637, |
| hsa04270 | Vascular smooth muscle contraction | 0.340991 | 2 | 1 | P62158, |
| hsa05214 | Glioma | 0.340991 | 2 | 1 | P62158, |
| hsa04014 | Ras signaling pathway | 0.340991 | 2 | 1 | P62158, |
| hsa04614 | Renin-angiotensin system | 0.340991 | 2 | 1 | P01019, |
| hsa05222 | Small cell lung cancer | 0.340991 | 2 | 1 |
|
| hsa05031 | Amphetamine addiction | 0.340991 | 2 | 1 | P62158, |
| hsa04750 | Inflammatory mediator regulation of TRP channels | 0.340991 | 2 | 1 | P62158, |
| hsa04720 | Long-term potentiation | 0.340991 | 2 | 1 | P62158, |
| hsa04973 | Carbohydrate digestion and absorption | 0.340991 | 2 | 1 | P13637, |
| hsa04972 | Pancreatic secretion | 0.340991 | 2 | 1 | P13637, |
| hsa05203 | Viral carcinogenesis | 0.342177 | 11 | 3 | P14618, P06396, P62258, |
| hsa05152 | Tuberculosis | 0.390394 | 7 | 2 | P18428, P62158, |
| hsa04110 | Cell cycle | 0.390394 | 7 | 2 | P62258, Q8NDV3, |
| hsa03050 | Proteasome | 0.390394 | 7 | 2 | P49721, O14818, |
| hsa05010 | Alzheimer's disease | 0.390394 | 7 | 2 | P62158, |
|
| |||||
| hsa04740 | Olfactory transduction | 0.465489 | 3 | 1 | P62158, |
| hsa04713 | Circadian entrainment | 0.465489 | 3 | 1 | P62158, |
| hsa04728 | Dopaminergic synapse | 0.465489 | 3 | 1 | P62158, |
| hsa04064 | NF-kappa B signaling pathway | 0.465489 | 3 | 1 | P18428, |
| hsa04930 | Type II diabetes mellitus | 0.465489 | 3 | 1 | P14618, |
| hsa04620 | Toll-like receptor signaling pathway | 0.465489 | 3 | 1 | P18428, |
| hsa04916 | Melanogenesis | 0.465489 | 3 | 1 | P62158, |
| hsa05100 | Bacterial invasion of epithelial cells | 0.465489 | 3 | 1 |
|
| hsa00620 | Pyruvate metabolism | 0.465489 | 3 | 1 | P14618, |
| hsa04919 | Thyroid hormone signaling pathway | 0.465489 | 3 | 1 | P13637, |
| hsa04621 | NOD-like receptor signaling pathway | 0.465489 | 3 | 1 | P14625, |
| hsa00330 | Arginine and proline metabolism | 0.465489 | 3 | 1 | Q96KN2, |
| hsa05215 | Prostate cancer | 0.465489 | 3 | 1 | P14625, |
Note. Italic font indicated the candidate protein.
Differently enriched pathways were obtained in SANFH-TCM versus SANFH.
| Pathway_acc | Pathway_Name |
| Protein in background | Proteins in Diff Exp | Protein list |
|---|---|---|---|---|---|
| hsa04062 | Chemokine signaling pathway | 0.01871823 | 6 | 4 | P10720, P55774, P02776, P02775, |
| hsa04611 | Platelet activation | 0.0942118 | 9 | 4 |
|
| hsa04060 | Cytokine-cytokine receptor interaction | 0.0942118 | 9 | 4 | P10720, P55774, P02776, P02775, |
| hsa00563 | Glycosylphosphatidylinositol (GPI)-anchor biosynthesis | 0.2080201 | 1 | 1 | P80108, |
| hsa00410 | beta-Alanine metabolism | 0.2080201 | 1 | 1 | Q96KN2, |
| hsa02010 | ABC transporters | 0.2080201 | 1 | 1 | Q9NP78, |
| hsa04666 | Fc gamma R-mediated phagocytosis | 0.2080201 | 1 | 1 | P06396, |
| hsa00900 | Terpenoid backbone biosynthesis | 0.2080201 | 1 | 1 | Q9UHG3, |
| hsa00230 | Purine metabolism | 0.2080201 | 1 | 1 | P14618, |
| hsa00340 | Histidine metabolism | 0.2080201 | 1 | 1 | Q96KN2, |
| hsa04120 | Ubiquitin mediated proteolysis | 0.2756015 | 13 | 4 | P01742, P04438, P01769, P01743, |
| hsa04810 | Regulation of actin cytoskeleton | 0.2820364 | 9 | 3 |
|
| hsa05150 | Staphylococcus aureus infection | 0.3119404 | 18 | 5 | P08603, P0C0L4, |
| hsa05146 | Amoebiasis | 0.3460206 | 10 | 3 |
|
| hsa05222 | Small cell lung cancer | 0.3731817 | 2 | 1 |
|
| hsa04614 | Renin-angiotensin system | 0.3731817 | 2 | 1 | P01019, |
| hsa04978 | Mineral absorption | 0.3731817 | 2 | 1 | P02787, |
| hsa05412 | Arrhythmogenic right ventricular cardiomyopathy (ARVC) | 0.3731817 | 2 | 1 | O43707, |
| hsa05203 | Viral carcinogenesis | 0.4095525 | 11 | 3 | P14618, O43707, P06396, |
| hsa03050 | Proteasome | 0.4460931 | 7 | 2 | P49721, P25789, |
Note. Italic font indicated the candidate protein.