Literature DB >> 29746131

Vibrational Energy Transfer from Heme through Atomic Contacts in Proteins.

Satoshi Yamashita1, Misao Mizuno1, Duy Phuoc Tran2, Hisham Dokainish2, Akio Kitao2, Yasuhisa Mizutani1.   

Abstract

A pathway of vibrational energy flow in myoglobin was studied by time-resolved anti-Stokes ultraviolet resonance Raman spectroscopy combined with site-directed mutagenesis. Our previous study suggested that atomic contacts in proteins provide the dominant pathway for energy transfer while covalent bonds do not. In the present study, we directly examined the contributions of covalent bonds and atomic contacts to the pathway of vibrational energy flow by comparing the anti-Stokes resonance Raman spectra of two myoglobin mutants: one lacked a covalent bond between heme and the polypeptide chain, and the other retained the intact bond. The two mutants showed no significant difference in temporal changes in the anti-Stokes Raman intensities of the tryptophan bands, implying that the dominant channel of vibrational energy transfer is not through the covalent bond but rather through van der Waals atomic contacts between heme and the protein moiety. The obtained insights contribute to our general understanding of energy transfer in the condensed phase.

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Year:  2018        PMID: 29746131     DOI: 10.1021/acs.jpcb.8b03518

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Structure, dynamics, and energy flow that govern Heme protein functions: theory and experiments. Session 3SBA at the 57th BSJ Annual Meeting.

Authors:  Takahisa Yamato; David M Leitner
Journal:  Biophys Rev       Date:  2020-01-30

Review 2.  Recent developments in the computational study of protein structural and vibrational energy dynamics.

Authors:  David M Leitner; Takahisa Yamato
Journal:  Biophys Rev       Date:  2020-03-02

Review 3.  Role of atomic contacts in vibrational energy transfer in myoglobin.

Authors:  Misao Mizuno; Yasuhisa Mizutani
Journal:  Biophys Rev       Date:  2020-03-23

4.  Energy Bilocalization Effect and the Emergence of Molecular Functions in Proteins.

Authors:  Yann Chalopin; Julien Sparfel
Journal:  Front Mol Biosci       Date:  2021-12-23

5.  Through bonds or contacts? Mapping protein vibrational energy transfer using non-canonical amino acids.

Authors:  Erhan Deniz; Luis Valiño-Borau; Jan G Löffler; Katharina B Eberl; Adnan Gulzar; Steffen Wolf; Patrick M Durkin; Robert Kaml; Nediljko Budisa; Gerhard Stock; Jens Bredenbeck
Journal:  Nat Commun       Date:  2021-06-02       Impact factor: 14.919

  5 in total

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