Literature DB >> 29744841

Preparation and Screening of Catalytic Amyloid Assemblies.

Zsofia Lengyel1, Caroline M Rufo1, Ivan V Korendovych2.   

Abstract

Aggregation of proteins into amyloids has long been recognized as one of the major contributors to disease and aging. Amyloids are known to catalyze their own formation but they have been considered the rock-bottom thermodynamic minimum of the protein fold without much functionality. We have recently demonstrated that aggregation of short peptides in the presence of metal ions gives rise to efficient catalytic activity. Here we present a detailed protocol for the synthesis and purification of these peptides and the preparation of amyloid-like fibrils. Then we describe an easy-to-perform, high-throughput assay to measure their hydrolytic activity.

Entities:  

Keywords:  Amyloids; Catalysis; Hydrolysis; Peptides; Self-assembly

Mesh:

Substances:

Year:  2018        PMID: 29744841      PMCID: PMC5951385          DOI: 10.1007/978-1-4939-7811-3_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

Review 1.  On the possible amyloid origin of protein folds.

Authors:  Jason Greenwald; Roland Riek
Journal:  J Mol Biol       Date:  2012-04-24       Impact factor: 5.469

2.  Prediction of molar extinction coefficients of proteins and peptides using UV absorption of the constituent amino acids at 214 nm to enable quantitative reverse phase high-performance liquid chromatography-mass spectrometry analysis.

Authors:  Bas J H Kuipers; Harry Gruppen
Journal:  J Agric Food Chem       Date:  2007-06-01       Impact factor: 5.279

3.  Atomic structures of amyloid cross-beta spines reveal varied steric zippers.

Authors:  Michael R Sawaya; Shilpa Sambashivan; Rebecca Nelson; Magdalena I Ivanova; Stuart A Sievers; Marcin I Apostol; Michael J Thompson; Melinda Balbirnie; Jed J W Wiltzius; Heather T McFarlane; Anders Ø Madsen; Christian Riekel; David Eisenberg
Journal:  Nature       Date:  2007-04-29       Impact factor: 49.962

4.  Self-assembled Peptide nanofibers designed as biological enzymes for catalyzing ester hydrolysis.

Authors:  Chunqiu Zhang; Xiangdong Xue; Quan Luo; Yiwei Li; Keni Yang; Xiaoxi Zhuang; Yonggang Jiang; Jinchao Zhang; Junqiu Liu; Guozhang Zou; Xing-Jie Liang
Journal:  ACS Nano       Date:  2014-11-10       Impact factor: 15.881

5.  Structure-based design of functional amyloid materials.

Authors:  Dan Li; Eric M Jones; Michael R Sawaya; Hiroyasu Furukawa; Fang Luo; Magdalena Ivanova; Stuart A Sievers; Wenyuan Wang; Omar M Yaghi; Cong Liu; David S Eisenberg
Journal:  J Am Chem Soc       Date:  2014-12-19       Impact factor: 15.419

6.  Engineering amyloid fibrils from β-solenoid proteins for biomaterials applications.

Authors:  Maria D R Peralta; Arpad Karsai; Alice Ngo; Catherine Sierra; Kai T Fong; Natha Robert Hayre; Nima Mirzaee; Krishnakumar Mayuram Ravikumar; Alexander J Kluber; Xi Chen; Gang-yu Liu; Michael D Toney; Rajiv R Singh; Daniel Lee Cox
Journal:  ACS Nano       Date:  2015-01-08       Impact factor: 15.881

7.  Photoinitiated [corrected] charge separation in a hybrid titanium dioxide metalloporphyrin peptide material.

Authors:  H Christopher Fry; Yuzi Liu; Nada M Dimitrijevic; Tijana Rajh
Journal:  Nat Commun       Date:  2014-08-18       Impact factor: 14.919

8.  Copper(II)-Mediated Self-Assembly of Hairpin Peptides and Templated Synthesis of CuS Nanowires.

Authors:  Chengdong Wang; Yawei Sun; Jiqian Wang; Hai Xu; Jian R Lu
Journal:  Chem Asian J       Date:  2015-07-30

9.  Short peptides self-assemble to produce catalytic amyloids.

Authors:  Caroline M Rufo; Yurii S Moroz; Olesia V Moroz; Jan Stöhr; Tyler A Smith; Xiaozhen Hu; William F DeGrado; Ivan V Korendovych
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

10.  Towards Prebiotic Catalytic Amyloids Using High Throughput Screening.

Authors:  Michael P Friedmann; Vladimir Torbeev; Viviane Zelenay; Alexander Sobol; Jason Greenwald; Roland Riek
Journal:  PLoS One       Date:  2015-12-09       Impact factor: 3.240

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  2 in total

1.  Synergistic Interactions Are Prevalent in Catalytic Amyloids.

Authors:  Liam R Marshall; Megha Jayachandran; Zsofia Lengyel-Zhand; Caroline M Rufo; Austin Kriews; Min-Chul Kim; Ivan V Korendovych
Journal:  Chembiochem       Date:  2020-06-09       Impact factor: 3.164

2.  Beneficial Impacts of Incorporating the Non-Natural Amino Acid Azulenyl-Alanine into the Trp-Rich Antimicrobial Peptide buCATHL4B.

Authors:  Areetha R D'Souza; Matthew R Necelis; Alona Kulesha; Gregory A Caputo; Olga V Makhlynets
Journal:  Biomolecules       Date:  2021-03-12
  2 in total

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