Literature DB >> 25562726

Engineering amyloid fibrils from β-solenoid proteins for biomaterials applications.

Maria D R Peralta1, Arpad Karsai, Alice Ngo, Catherine Sierra, Kai T Fong, Natha Robert Hayre, Nima Mirzaee, Krishnakumar Mayuram Ravikumar, Alexander J Kluber, Xi Chen, Gang-yu Liu, Michael D Toney, Rajiv R Singh, Daniel Lee Cox.   

Abstract

Nature provides numerous examples of self-assembly that can potentially be implemented for materials applications. Considerable attention has been given to one-dimensional cross-β or amyloid structures that can serve as templates for wire growth or strengthen materials such as glue or cement. Here, we demonstrate controlled amyloid self-assembly based on modifications of β-solenoid proteins. They occur naturally in several contexts (e.g., antifreeze proteins, drug resistance proteins) but do not aggregate in vivo due to capping structures or distortions at their ends. Removal of these capping structures and regularization of the ends of the spruce budworm and rye grass antifreeze proteins yield micron length amyloid fibrils with predictable heights, which can be a platform for biomaterial-based self-assembly. The design process, including all-atom molecular dynamics simulations, purification, and self-assembly procedures are described. Fibril formation with the predicted characteristics is supported by evidence from thioflavin-T fluorescence, circular dichroism, dynamic light scattering, and atomic force microscopy. Additionally, we find evidence for lateral assembly of the modified spruce budworm antifreeze fibrils with sufficient incubation time. The kinetics of polymerization are consistent with those for other amyloid formation reactions and are relatively fast due to the preformed nature of the polymerization nucleus.

Entities:  

Keywords:  amyloid; antifreeze protein; atomic force microscopy; thioflavin-T fluorescence; β-solenoid

Mesh:

Substances:

Year:  2015        PMID: 25562726     DOI: 10.1021/nn5056089

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  16 in total

1.  Structural and Mechanical Properties of Amyloid Beta Fibrils: A Combined Experimental and Theoretical Approach.

Authors:  Thomas J Paul; Zachary Hoffmann; Congzhou Wang; Maruda Shanmugasundaram; Jason DeJoannis; Alexander Shekhtman; Igor K Lednev; Vamsi K Yadavalli; Rajeev Prabhakar
Journal:  J Phys Chem Lett       Date:  2016-07-08       Impact factor: 6.475

2.  A Protocol for the Design of Protein and Peptide Nanostructure Self-Assemblies Exploiting Synthetic Amino Acids.

Authors:  Nurit Haspel; Jie Zheng; Carlos Aleman; David Zanuy; Ruth Nussinov
Journal:  Methods Mol Biol       Date:  2017

Review 3.  Structural Bases of Prion Variation in Yeast.

Authors:  Vitaly V Kushnirov; Alexander A Dergalev; Maya K Alieva; Alexander I Alexandrov
Journal:  Int J Mol Sci       Date:  2022-05-20       Impact factor: 6.208

Review 4.  General Principles Underpinning Amyloid Structure.

Authors:  Alexander I P Taylor; Rosemary A Staniforth
Journal:  Front Neurosci       Date:  2022-06-02       Impact factor: 5.152

5.  High Tensile Strength of Engineered β-Solenoid Fibrils via Sonication and Pulling.

Authors:  Zeyu Peng; Amanda S Parker; Maria D R Peralta; Krishnakumar M Ravikumar; Daniel L Cox; Michael D Toney
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

6.  Distal amyloid β-protein fragments template amyloid assembly.

Authors:  Thanh D Do; Smriti Sangwan; Natália E C de Almeida; Alexandre I Ilitchev; Maxwell Giammona; Michael R Sawaya; Steven K Buratto; David S Eisenberg; Michael T Bowers
Journal:  Protein Sci       Date:  2018-02-16       Impact factor: 6.725

7.  Preparation and Screening of Catalytic Amyloid Assemblies.

Authors:  Zsofia Lengyel; Caroline M Rufo; Ivan V Korendovych
Journal:  Methods Mol Biol       Date:  2018

8.  Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments.

Authors:  Irena Roterman; Mateusz Banach; Leszek Konieczny
Journal:  Pharmaceuticals (Basel)       Date:  2017-11-16

9.  Navigating in foldonia: Using accelerated molecular dynamics to explore stability, unfolding and self-healing of the β-solenoid structure formed by a silk-like polypeptide.

Authors:  Binwu Zhao; Martien A Cohen Stuart; Carol K Hall
Journal:  PLoS Comput Biol       Date:  2017-03-22       Impact factor: 4.475

Review 10.  Comparing the Folds of Prions and Other Pathogenic Amyloids.

Authors:  José Miguel Flores-Fernández; Vineet Rathod; Holger Wille
Journal:  Pathogens       Date:  2018-05-04
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