| Literature DB >> 29742149 |
María Ángeles Jiménez-Sousa1, Ana Zaida Gómez-Moreno2, Daniel Pineda-Tenor3, Luz Maria Medrano1, Juan José Sánchez-Ruano2, Amanda Fernández-Rodríguez1, Tomas Artaza-Varasa2, José Saura-Montalbán4, Sonia Vázquez-Morón1, Pablo Ryan5,6,7, Salvador Resino1.
Abstract
The polymorphisms at the α-chain of the IL-7 receptor (IL7RA) have been related to T-cell homeostasis and development and may contribute to immune system deregulation. In the present study, we analyzed the association between IL7RA polymorphisms and the progression of liver fibrosis in patients infected with HCV. We carried out a retrospective study with a design consisting of repeated measurements in 187 HCV-infected patients, to study the risk prediction of liver fibrosis progression using genetic factors. We genotyped the rs6897932, rs987106 and rs3194051 IL7RA polymorphisms using the Agena Bioscience's MassARRAY. Transient elastography was used to measure liver stiffness. The used cut-offs were: <7.1 kPa (F0-F1), 7.1-9.4 kPa (F2; significant fibrosis), 9.5-12.4 kPa (F3; advanced fibrosis), and ≥12.5 kPa (F4; cirrhosis). All HCV genotypes were analyzed. The median of follow-up time was 47.9 months. Baseline liver stiffness measurement (LSM) values did not show significant statistical differences for IL7RA genotypes (p>0.05). In univariate analysis, the rs6897932 T allele had a positive relationship with an increase in LSM (arithmetic mean ratio (AMR) = 1.21 (95%CI = 1.08; 1.36); p = 0.001), progression to advanced fibrosis (F≥3) (odds ratio (OR) = 2.51 (95%CI = 1.29; 4.88); p = 0.006) and progression to cirrhosis (F4) (OR = 2.71 (95%CI = 0.94; 5.03); p = 0.069). In multivariable analysis, the rs6897932 T allele was related to a higher increase of LSM values during follow-up (adjusted AMR = 1.27 (95%CI = 1.13; 1.42); p<0.001) and higher odds of progression to advanced fibrosis [adjusted OR = 4.46 (95%CI = 1.87; 10.62); p = 0.001], and progression to cirrhosis [adjusted OR = 3.92 (95%CI = 1.30; 11.77); p = 0.015]. Regarding IL7RA rs987106 and rs3194051 polymorphisms, we did not find significant results except for the relationship between IL7RA rs987106 and the increase in LSM values [adjusted OR = 1.12 (95%CI = 1.02; 1.23); p = 0.015]. The IL7RA rs6897932 polymorphism seems to be related to increased risk of liver fibrosis progression in HCV-infected patients. Thus, the rs6897932 polymorphism could be related to the physiopathology of CHC and might be used to successfully stratify the risk of CHC progression.Entities:
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Year: 2018 PMID: 29742149 PMCID: PMC5942816 DOI: 10.1371/journal.pone.0197115
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical and epidemiological characteristics of HCV-infected patients.
| Characteristic | All Patients |
|---|---|
| 187 | |
| 102 (54.5%) | |
| 46.4 (40.9; 55.8) | |
| 7.5 (2.9; 12.9) | |
| 25 (13.4%) | |
| 20 (10.7%) | |
| | 154 (83.7%) |
| | 14 (7.6%) |
| | 15 (8.2%) |
| | 1 (0.5%) |
| 42 (22.5%) | |
| 6.1 (5.3; 8.4) | |
| | 149 (79.7%) |
| | 38 (20.3%) |
| 47.9 (29.2; 62.7) | |
| 6.7 (5.3; 8.6) | |
| | 108 (57.8%) |
| | 47 (25.1%) |
| | 15 (8.0%) |
| | 17 (9.1%) |
Values expressed as absolute numbers (%) and median (percentile 25; percentile 75). High alcohol intake was considered as levels above 60 grams/day for men and above 20 grams/day for women.
Abbreviations: Abbreviations: HCV, hepatitis C virus; LSM, liver stiffness measurement; kPa, kilopascal; IFN, interferon; peg-IFN-α/RBV, peg-interferon-alpha/ribavirin.
Summary of Hardy Weinberg Equilibrium and frequencies of alleles and genotypes for IL7RA polymorphisms in HCV-infected patients compared to Iberian populations in Spain (IBS) and Utah residents with Northern and Western European ancestry (CEU) from 1000 genomes project data (http://browser.1000genomes.org/index.html).
| HCV group (n = 187) | IBS group (n = 107) | χ2 test(a) | χ2 test (b) | CEU group (n = 99) | χ2 test(a) | χ2 test (b) | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | HWE | Alleles | Genotypes | HWE | Alleles | Genotypes | p-value | p-value | HWE | Alleles | Genotypes | p-value | p-value | ||||||
| 0.216 | C | 76.7% | CC | 56.7% | 0.551 | C | 74.8% | CC | 57.0% | 0.714 | 0.225 | 0.507 | C | 75.8% | CC | 58.6% | 0.865 | 0.255 | |
| T | 23.3% | CT | 40.1% | T | 25.2% | CT | 35.5% | T | 24.2% | CT | 34.3% | ||||||||
| TT | 3.2% | TT | 7.5% | TT | 7.1% | ||||||||||||||
| 0.605 | A | 43.0% | AA | 19.8% | 0.308 | A | 49.5% | AA | 27.1% | 0.283 | 0.308 | 0.456 | A | 42.4% | AA | 16.2% | 0.922 | 0.592 | |
| T | 57.0% | AT | 46.5% | T | 50.5% | AT | 44.9% | T | 57.6% | AT | 52.5% | ||||||||
| TT | 33.7% | TT | 28.0% | TT | 31.3% | ||||||||||||||
| 0.255 | A | 66.3% | AA | 46.5% | 0.937 | A | 74.8% | AA | 56.1% | 0.130 | 0.100 | 0.646 | A | 66.7% | AA | 43.4% | 0.946 | 0.446 | |
| G | 33.7% | AG | 39.6% | G | 25.2% | AG | 37.4% | G | 33.3% | AG | 46.5% | ||||||||
| GG | 13.9% | GG | 6.5% | GG | 10.1% | ||||||||||||||
Statistical: p-values were calculated by Chi-squared test; (a), differences between allele frequencies; (b), differences between genotype frequencies.
Abbreviations: HWE, Hardy Weinberg Equilibrium; HCV, hepatitis C virus; IL7RA, α-chain of the interleukin 7 receptor.