Literature DB >> 29738987

Single cell transcriptomics in neuroscience: cell classification and beyond.

Bosiljka Tasic1.   

Abstract

Biology has been facing a daunting problem since the cell was understood to be the building block of metazoans: how do we study multicellular systems, when a universal approach to characterize their building blocks and classify them does not exist? Metazoan diversity has not helped: there are many model and non-model organisms, developmental and adult stages, healthy and diseased states. Here, I review the application of single cell transcriptomics to cell classification in neuroscience and its corollaries: the differentially expressed genes discovered in this process are a treasure trove for understanding cell type function and enabling specific access to those types. The advancements and widespread adoption of single-cell transcriptomics are bound to transform our understanding of neural system development, function, pathology and evolution.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2018        PMID: 29738987     DOI: 10.1016/j.conb.2018.04.021

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  26 in total

1.  Functional specification of CCK+ interneurons by alternative isoforms of Kv4.3 auxiliary subunits.

Authors:  Viktor János Oláh; David Lukacsovich; Jochen Winterer; Antónia Arszovszki; Andrea Lőrincz; Zoltan Nusser; Csaba Földy; János Szabadics
Journal:  Elife       Date:  2020-06-03       Impact factor: 8.140

Review 2.  Lessons from single cell sequencing in CNS cell specification and function.

Authors:  Zhen Li; William A Tyler; Tarik F Haydar
Journal:  Curr Opin Genet Dev       Date:  2020-07-14       Impact factor: 5.578

Review 3.  Classification of Midbrain Dopamine Neurons Using Single-Cell Gene Expression Profiling Approaches.

Authors:  Jean-Francois Poulin; Zachary Gaertner; Oscar Andrés Moreno-Ramos; Rajeshwar Awatramani
Journal:  Trends Neurosci       Date:  2020-02-11       Impact factor: 13.837

4.  Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior.

Authors:  Dong-Wook Kim; Zizhen Yao; Lucas T Graybuck; Tae Kyung Kim; Thuc Nghi Nguyen; Kimberly A Smith; Olivia Fong; Lynn Yi; Noushin Koulena; Nico Pierson; Sheel Shah; Liching Lo; Allan-Hermann Pool; Yuki Oka; Lior Pachter; Long Cai; Bosiljka Tasic; Hongkui Zeng; David J Anderson
Journal:  Cell       Date:  2019-10-17       Impact factor: 41.582

5.  Genomics at cellular resolution: insights into cognitive disorders and their evolution.

Authors:  Stefano Berto; Yuxiang Liu; Genevieve Konopka
Journal:  Hum Mol Genet       Date:  2020-09-30       Impact factor: 6.150

6.  A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons.

Authors:  Benjamin W Okaty; Nikita Sturrock; Yasmin Escobedo Lozoya; YoonJeung Chang; Rebecca A Senft; Krissy A Lyon; Olga V Alekseyenko; Susan M Dymecki
Journal:  Elife       Date:  2020-06-22       Impact factor: 8.140

7.  Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population.

Authors:  Euiseok J Kim; Zhuzhu Zhang; Ling Huang; Tony Ito-Cole; Matthew W Jacobs; Ashley L Juavinett; Gokhan Senturk; Mo Hu; Manching Ku; Joseph R Ecker; Edward M Callaway
Journal:  Neuron       Date:  2020-05-11       Impact factor: 17.173

8.  Single-cell transcriptomic evidence for dense intracortical neuropeptide networks.

Authors:  Stephen J Smith; Uygar Sümbül; Lucas T Graybuck; Forrest Collman; Sharmishtaa Seshamani; Rohan Gala; Olga Gliko; Leila Elabbady; Jeremy A Miller; Trygve E Bakken; Jean Rossier; Zizhen Yao; Ed Lein; Hongkui Zeng; Bosiljka Tasic; Michael Hawrylycz
Journal:  Elife       Date:  2019-11-11       Impact factor: 8.140

Review 9.  The diversity of GABAergic neurons and neural communication elements.

Authors:  Z Josh Huang; Anirban Paul
Journal:  Nat Rev Neurosci       Date:  2019-06-20       Impact factor: 34.870

10.  Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of human cornea.

Authors:  De-Quan Li; Sangbae Kim; Jin-Miao Li; Qianmiao Gao; Jongsu Choi; Fang Bian; Jiaoyue Hu; Yun Zhang; Jin Li; Rong Lu; Yumei Li; Stephen C Pflugfelder; Hongyu Miao; Rui Chen
Journal:  Ocul Surf       Date:  2021-01-01       Impact factor: 5.033

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