Literature DB >> 29734314

Boosting the power of single-cell analysis.

Lu Wen1, Fuchou Tang1.   

Abstract

Mesh：

Year:  2018        PMID： 29734314     DOI： 10.1038/nbt.4131

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  7 in total

1.  Adjusting batch effects in microarray expression data using empirical Bayes methods.

Authors:  W Evan Johnson; Cheng Li; Ariel Rabinovic
Journal:  Biostatistics       Date:  2006-04-21       Impact factor: 5.899

Review 2.  Every cell is special: genome-wide studies add a new dimension to single-cell biology.

Authors:  Jan Philipp Junker; Alexander van Oudenaarden
Journal:  Cell       Date:  2014-03-27       Impact factor: 41.582

Review 3.  Single cell epigenome sequencing technologies.

Authors:  Lu Wen; Fuchou Tang
Journal:  Mol Aspects Med       Date:  2017-09-21

4.  limma powers differential expression analyses for RNA-sequencing and microarray studies.

Authors:  Matthew E Ritchie; Belinda Phipson; Di Wu; Yifang Hu; Charity W Law; Wei Shi; Gordon K Smyth
Journal:  Nucleic Acids Res       Date:  2015-01-20       Impact factor: 16.971

Review 5.  Single-cell epigenomics: Recording the past and predicting the future.

Authors:  Gavin Kelsey; Oliver Stegle; Wolf Reik
Journal:  Science       Date:  2017-10-06       Impact factor: 47.728

Review 6.  Single-cell sequencing in stem cell biology.

Authors:  Lu Wen; Fuchou Tang
Journal:  Genome Biol       Date:  2016-04-15       Impact factor: 13.583

7.  The Human Cell Atlas.

Authors:  Aviv Regev; Sarah A Teichmann; Eric S Lander; Ido Amit; Christophe Benoist; Ewan Birney; Bernd Bodenmiller; Peter Campbell; Piero Carninci; Menna Clatworthy; Hans Clevers; Bart Deplancke; Ian Dunham; James Eberwine; Roland Eils; Wolfgang Enard; Andrew Farmer; Lars Fugger; Berthold Göttgens; Nir Hacohen; Muzlifah Haniffa; Martin Hemberg; Seung Kim; Paul Klenerman; Arnold Kriegstein; Ed Lein; Sten Linnarsson; Emma Lundberg; Joakim Lundeberg; Partha Majumder; John C Marioni; Miriam Merad; Musa Mhlanga; Martijn Nawijn; Mihai Netea; Garry Nolan; Dana Pe'er; Anthony Phillipakis; Chris P Ponting; Stephen Quake; Wolf Reik; Orit Rozenblatt-Rosen; Joshua Sanes; Rahul Satija; Ton N Schumacher; Alex Shalek; Ehud Shapiro; Padmanee Sharma; Jay W Shin; Oliver Stegle; Michael Stratton; Michael J T Stubbington; Fabian J Theis; Matthias Uhlen; Alexander van Oudenaarden; Allon Wagner; Fiona Watt; Jonathan Weissman; Barbara Wold; Ramnik Xavier; Nir Yosef
Journal:  Elife       Date:  2017-12-05       Impact factor: 8.140
  7 in total
  12 in total

1.  Advancement of Single-Cell Sequencing in Medulloblastoma.

Authors:  Deepanshu Verma; Namyashree Nayak; Ashuthosh Singh; Ashutosh Kumar Singh; Neha Garg
Journal:  Methods Mol Biol       Date:  2022

2.  PCGA: a comprehensive web server for phenotype-cell-gene association analysis.

Authors:  Chao Xue; Lin Jiang; Miao Zhou; Qihan Long; Ying Chen; Xiangyi Li; Wenjie Peng; Qi Yang; Miaoxin Li
Journal:  Nucleic Acids Res       Date:  2022-05-26       Impact factor: 19.160

3.  Revealing the Key MSCs Niches and Pathogenic Genes in Influencing CEP Homeostasis: A Conjoint Analysis of Single-Cell and WGCNA.

Authors:  Weihang Li; Shilei Zhang; Yingjing Zhao; Dong Wang; Quan Shi; Ziyi Ding; Yongchun Wang; Bo Gao; Ming Yan
Journal:  Front Immunol       Date:  2022-06-27       Impact factor: 8.786

Review 4.  Tools used to assay genomic instability in cancers and cancer meiomitosis.

Authors:  Jennifer Gantchev; Brandon Ramchatesingh; Melissa Berman-Rosa; Daniel Sikorski; Keerthenan Raveendra; Laetitia Amar; Hong Hao Xu; Amelia Martínez Villarreal; Daniel Josue Guerra Ordaz; Ivan V Litvinov
Journal:  J Cell Commun Signal       Date:  2021-11-29       Impact factor: 5.908

5.  Spatially defined single-cell transcriptional profiling characterizes diverse chondrocyte subtypes and nucleus pulposus progenitors in human intervertebral discs.

Authors:  Yibo Gan; Jian He; Jun Zhu; Zhengyang Xu; Zhong Wang; Jing Yan; Ou Hu; Zhijie Bai; Lin Chen; Yangli Xie; Min Jin; Shuo Huang; Bing Liu; Peng Liu
Journal:  Bone Res       Date:  2021-08-16       Impact factor: 13.567

Review 6.  Current Epigenetic Insights in Kidney Development.

Authors:  Katrina Chan; Xiaogang Li
Journal:  Genes (Basel)       Date:  2021-08-21       Impact factor: 4.141

Review 7.  The single-cell sequencing: new developments and medical applications.

Authors:  Xiaoning Tang; Yongmei Huang; Jinli Lei; Hui Luo; Xiao Zhu
Journal:  Cell Biosci       Date:  2019-06-26       Impact factor: 7.133

8.  Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models.

Authors:  Chenling Xu; Romain Lopez; Edouard Mehlman; Jeffrey Regier; Michael I Jordan; Nir Yosef
Journal:  Mol Syst Biol       Date:  2021-01       Impact factor: 11.429

9.  Application of single-cell transcriptomics to kinetoplastid research.

Authors:  Emma M Briggs; Felix S L Warren; Keith R Matthews; Richard McCulloch; Thomas D Otto
Journal:  Parasitology       Date:  2021-03-08       Impact factor: 3.234

10.  High-grade serous tubo-ovarian cancer refined with single-cell RNA sequencing: specific cell subtypes influence survival and determine molecular subtype classification.

Authors:  Siel Olbrecht; Pieter Busschaert; Junbin Qian; Adriaan Vanderstichele; Liselore Loverix; Toon Van Gorp; Els Van Nieuwenhuysen; Sileny Han; Annick Van den Broeck; An Coosemans; Anne-Sophie Van Rompuy; Diether Lambrechts; Ignace Vergote
Journal:  Genome Med       Date:  2021-07-09       Impact factor: 11.117
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