Literature DB >> 29732893

Inclusion of Machine Learning Kernel Ridge Regression Potential Energy Surfaces in On-the-Fly Nonadiabatic Molecular Dynamics Simulation.

Deping Hu1,2, Yu Xie1, Xusong Li1,2, Lingyue Li2, Zhenggang Lan1,2.   

Abstract

We discuss a theoretical approach that employs machine learning potential energy surfaces (ML-PESs) in the nonadiabatic dynamics simulation of polyatomic systems by taking 6-aminopyrimidine as a typical example. The Zhu-Nakamura theory is employed in the surface hopping dynamics, which does not require the calculation of the nonadiabatic coupling vectors. The kernel ridge regression is used in the construction of the adiabatic PESs. In the nonadiabatic dynamics simulation, we use ML-PESs for most geometries and switch back to the electronic structure calculations for a few geometries either near the S1/S0 conical intersections or in the out-of-confidence regions. The dynamics results based on ML-PESs are consistent with those based on CASSCF PESs. The ML-PESs are further used to achieve the highly efficient massive dynamics simulations with a large number of trajectories. This work displays the powerful role of ML methods in the nonadiabatic dynamics simulation of polyatomic systems.

Entities:  

Year:  2018        PMID: 29732893     DOI: 10.1021/acs.jpclett.8b00684

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  13 in total

1.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

Review 2.  Coupled- and Independent-Trajectory Approaches Based on the Exact Factorization Using the PyUNIxMD Package.

Authors:  Tae In Kim; Jong-Kwon Ha; Seung Kyu Min
Journal:  Top Curr Chem (Cham)       Date:  2022-01-27

3.  Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential.

Authors:  Simon Axelrod; Eugene Shakhnovich; Rafael Gómez-Bombarelli
Journal:  Nat Commun       Date:  2022-06-15       Impact factor: 17.694

4.  Deep learning of dynamically responsive chemical Hamiltonians with semiempirical quantum mechanics.

Authors:  Guoqing Zhou; Nicholas Lubbers; Kipton Barros; Sergei Tretiak; Benjamin Nebgen
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-01       Impact factor: 12.779

Review 5.  MLatom 2: An Integrative Platform for Atomistic Machine Learning.

Authors:  Pavlo O Dral; Fuchun Ge; Bao-Xin Xue; Yi-Fan Hou; Max Pinheiro; Jianxing Huang; Mario Barbatti
Journal:  Top Curr Chem (Cham)       Date:  2021-06-08

6.  Theoretical studies on triplet-state driven dissociation of formaldehyde by quasi-classical molecular dynamics simulation on machine-learning potential energy surface.

Authors:  Shichen Lin; Daoling Peng; Weitao Yang; Feng Long Gu; Zhenggang Lan
Journal:  J Chem Phys       Date:  2021-12-07       Impact factor: 3.488

7.  Machine learning enables long time scale molecular photodynamics simulations.

Authors:  Julia Westermayr; Michael Gastegger; Maximilian F S J Menger; Sebastian Mai; Leticia González; Philipp Marquetand
Journal:  Chem Sci       Date:  2019-08-05       Impact factor: 9.969

8.  Combining SchNet and SHARC: The SchNarc Machine Learning Approach for Excited-State Dynamics.

Authors:  Julia Westermayr; Michael Gastegger; Philipp Marquetand
Journal:  J Phys Chem Lett       Date:  2020-05-01       Impact factor: 6.475

9.  PySurf: A Framework for Database Accelerated Direct Dynamics.

Authors:  Maximilian F S J Menger; Johannes Ehrmaier; Shirin Faraji
Journal:  J Chem Theory Comput       Date:  2020-11-24       Impact factor: 6.006

10.  Nonadiabatic Excited-State Dynamics with Machine Learning.

Authors:  Pavlo O Dral; Mario Barbatti; Walter Thiel
Journal:  J Phys Chem Lett       Date:  2018-09-13       Impact factor: 6.475

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