| Literature DB >> 29732254 |
Matt von Konrat1, Thomas Campbell2, Ben Carter3, Matthew Greif4, Mike Bryson5, Juan Larraín6, Laura Trouille7, Steve Cohen5, Eve Gaus1, Ayesha Qazi8, Eric Ribbens9, Tatyana Livshultz10, Taylor J Walker11, Tomomi Suwa1, Taylor Peterson1, Yarency Rodriguez1, Caitlin Vaughn1, Christina Yang1, Selma Aburahmeh2, Brian Carstensen6, Peter de Lange12, Charlie Delavoi13, Kalman Strauss1, Justyna Drag2, Blanka Aguero14, Chris Snyder6, Joann Martinec1, Arfon Smith6.
Abstract
PREMISE OF THE STUDY: Biological collections are uniquely poised to inform the stewardship of life on Earth in a time of cataclysmic biodiversity loss. Efforts to fully leverage collections are impeded by a lack of trained taxonomists and a lack of interest and engagement by the public. We provide a model of a crowd-sourced data collection project that produces quality taxonomic data sets and empowers citizen scientists through real contributions to science. Entitled MicroPlants, the project is a collaboration between taxonomists, citizen science experts, and teachers and students from universities and K-12.Entities:
Keywords: K–12; citizen science; college; digitization; education; liverworts; university
Year: 2018 PMID: 29732254 PMCID: PMC5851566 DOI: 10.1002/aps3.1023
Source DB: PubMed Journal: Appl Plant Sci ISSN: 2168-0450 Impact factor: 1.936
Summary statistics associated with the MicroPlants project as of 3 September 2017
| Criterion | Summary statistic |
|---|---|
| Images uploaded | 10,000 |
| Images measured | 9230 |
| Total no. of measurements | 90,098 |
| Individual participants | ca. 8000 |
| Participating schools/universities | 11 |
| Maximum length of stay | 1 h |
Summary statistics of lobule measurements after initial data cleaning and removal of missing data to test the hypothesis that valid data can be retrieved from citizen scientists
| Attribute | No. of measurements |
|---|---|
| After cleaning out those with angle <80° | 38,402 |
| After removing missing data (e.g., measurements with <4 mouse clicks) | 38,183 |
| After removing images with a single measurement | 37,190 |
| After removing the tutorial image | 35,342 |
| After removing outliers | 33,690 |
After computing mean and variance for measurements of a single lobule, removing poor measurements for just that lobule.
Figure 1Summary of the data processing. (A) Raw data (black) are assigned to clusters corresponding to lobules. (B) Clusters failing to meet quality criteria (clusters 6–9) are excluded, and a consensus (blue) among the remaining measurements is calculated for each lobule. (C) For a subset, the consensuses are compared to measurements made by a taxonomic expert (red). (D) The difference between citizen science measurements and expert measurements (dashed lines) is typically small relative to the size difference among lobules (distances among all points).
Figure 2Raw citizen science data (yellow line), consensus analysis (blue lines), and expert measurements (green dotted lines) with image of stem and lobules superimposed of two Frullania subg. Microfrullania vouchers: de Lange 11498 (A) and de Lange 11454 (B).
Figure 3Raw citizen science data (yellow lines) and expert measurements (green dotted lines) with image of stem and lobules superimposed of Frullania subg. Frullania sect. Australes (voucher de Lange 11607).
Summary statistics for three Frullania images (see, for example, Fig. 2) illustrating the data cleaning process. Lobules are included in downstream analyses only if they were measured multiple times and if the variance among individual measurements is low. Individual lobules are flagged (well, fair, poor) based on the variance among measurements of the individual lobule
| Attribute |
|
|
|
|---|---|---|---|
| Voucher ID |
|
|
|
| Citizen scientist measurements | 93 | 23 | 46 |
| Lobules in image | 9 | 9 | 9 |
| Lobules retained for analysis after cleaning | 9 | 1 | 8 |
| No. well measured | 8 | 0 | 8 |
| No. fairly measured | 1 | 0 | 0 |
| No. poorly measured | 0 | 1 | 0 |
| Mean quality index | 7.75 | 0 | 6.23 |
| Mean lobule length (μm) | 147.99 | NA | 149.01 |
| Variance of lobule lengths | 21.87 | NA | 125.87 |
NA = not applicable.
Figure 4Histogram of the minor axis (width) of Frullania subg. Microfrullania (gray bars) and Frullania subg. Frullania (black bars).
Figure 5Histogram of the major axis (length) of Frullania subg. Microfrullania (gray bars) and Frullania subg. Frullania (black bars).
Figure 6Scatterplot of the major axis versus minor axis of lobules for Frullania subg. Microfrullania (gray) and Frullania subg. Frullania (black) with line of best fit. The red dots represent a new, undescribed Frullania species.
Results of analysis of covariance (ANCOVA) testing the effects of subgenus and major axis on minor axis
| Factors | Sum of squares | df |
|
|
|---|---|---|---|---|
| Subgenus | 471.5 | 1 | 18.7901 | <0.001 |
| Major axis | 43,262 | 1 | 130.7428 | <0.001 |
| Residuals | 25,148 | 76 |
df = degrees of freedom; F = F‐test statistic.
A summary of how the MicroPlants tool has been utilized from 2013 to 2016 in five universities/colleges for which students received course credit or service learning hours
| Course name | College/University | Justification | Estimated no. of students |
|---|---|---|---|
| Introductory Biology and Introductory Botany | Wilbur Wright College | Gained an understanding of how scientific research was conducted | 720 |
| Essential Skills for Biologists | Northeastern Illinois University | Improve students’ mathematical, computer, and analytical skills | 300 |
| Introduction to Natural History Collections and Research | Drexel University | Teaching about the process of species discovery and description based on natural history specimens | 100 |
| Introduction to Plant Biology | Western Illinois University | Measuring attributes, participating in “real” biology | 75 |
| The Changing Natural Environment | Northeastern Illinois University | An engaging activity to learn about plants and data management | 50 |
| Introduction to the Learning Sciences | University of Illinois (Chicago) | Produced assignments reporting functionality and analysis of learning modules | 10 |
| Mathematical Industrial Applications | Roosevelt University | Used the data from MicroPlants to form the basis of course projects exploring ways to automate analysis and other problems | 20 |
| Seminar in Natural Science | Roosevelt University | Tested the functionality of the pilot version of the online tool as part of an introduction to the methods and analytic framework of the natural sciences | 7 |
Examples of how K–12 teachers/educators aligned the MicroPlants project to current Next Generation Science Standards (NGSS) or variously applied in the classroom
| School | Grades | Lesson/Activity | Application in classroom |
|---|---|---|---|
| Chicago public schools | 8–12 |
Plant unit in aquaponics |
From molecules to organisms: Structures and processes (LS1) |
| Elgin Academy | 5–6 | MicroPlants Plants Project | Discussed biodiversity, importance of changes over time, implications of extinction, students made measurements then read how their contribution was helping scientists |
| The Field Museum and participating schools | 5–6 | Activities, broadcast from scientist, MicroPlants |
Apply scientific ideas to construct an explanation for real‐world phenomena, examples, or events (MS‐LS4‐2) |
Figure 7The distribution of participant responses, ranking from strongly agree to strongly disagree, about having a better understanding on the processes involved in research.
Figure 9Scanning electron micrographs illustrating variation in leaf‐lobule shape, size, and position for a selection of Frullania species representing different subgenera (arrows indicating lobule feature). (A) Frullania (subg. Homotropantha) utriculata, (B) Frullania (subg. Frullania sect. Australes) anomala, (C) Frullania (subg. Frullania) pentapleura, (D) Frullania (subg. Microfrullania) microscopica, (E) Frullania (subg. Microfrullania) toropuku, (F) Frullania (subg. Diastaloba) hypoleuca, (G) Frullania (subg. Frullania) setchellii, (H) Frullania (subg. Frullania) probosciphora.
Figure 8The distribution of how many participants found the MicroPlants project very enjoyable to very unenjoyable.
Independent two‐tailed t‐test comparison of expert and participant lobule measures (μm) of image “Dna_F063_stem_100x_00119.jpg” on a museum exhibit kiosk
| Axis | Participant | Expert |
| ||
|---|---|---|---|---|---|
| Mean (μm) | SD | Mean (μm) | SD | ||
| Major axis | 145.9 | 54.7 | 138.3 | 1.8 | 1.81 |
| Minor axis | 82.8 | 40.6 | 77.8 | 0.3 | 1.68 |
SD = standard deviation.
P > 0.05, N = 190, t crit = 1.97.