| Literature DB >> 29724067 |
Hui Wen1, Nina Xue2, Feng Wu3, Yujun He4, Gang Zhang5, Zebin Hu6, Huaqing Cui7.
Abstract
Chromenone-derived natural products include chromones (flavone, isoflavone) and coumarins. Chromenone compounds not only exhibit impressive biological activities, but also are an important resource of experimentally used fluorophores, such as, 7-amino-4-methylcoumarin (AMC). Various chromenone compounds have reported to have weak fluorescence, and this has the potential to interfere with the measurements during AMC fluorogenic assays and result in non-robust assay readouts. Several flavones and isoflavones were found as SIRT1 activators, while fluorogenic sirtuin assays utilized AMC labelled peptides as the substrates. In this study we investigated whether the fluorescent properties of chromenone-derived natural products interrupt the measurement of SIRT1/2 modulated activities. We found that the reported SIRT1 activators: flavones were detected with the SIRT1 activation activity, but isoflavones were not detected with SIRT1 activation activity, and instead that they were found to be fluorogenic compounds. Another chromenone compound, osthole, exhibited a moderate SIRT2 inhibitory activity with an IC50 of 10 μM. In conclusion, the fluorescent properties of these chromenone compounds do affect the measurement of the sirtuin activities of both inhibitors and activators. However, if the possible fluorescence properties are mitigated in the assay readout, these fluorogenic assays enable the screening of activity modulators.Entities:
Keywords: AMC; SIRT1 activator; chromenone; fluorescence; fluorogenic assay; isoflavone; osthole; sirtuin
Mesh:
Substances:
Year: 2018 PMID: 29724067 PMCID: PMC6100537 DOI: 10.3390/molecules23051063
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Chemical structures of chromenone derived compounds (chromone and coumarin). The left handside shows the structures of chromone and other chromone derived compounds, such as, flavones, isoflavone and 3-alkyl-6-methoxy-7-hydroxychromone (AMHC). The right handside shows the structures of coumarin and 7-amino-4-methylcoumarin (AMC).
Figure 2The principle of AMC labelled fluorescence turn-on sirtuin assay. The AMC labelled peptide containing an acetylated lysine, in which the fluorescence is quenched. This peptide was used as the substrates in the assay and can be deacetylated by sirtuin enzyme in the presence of NAD+. The deacetylated peptide is then digested by trypsin to release the free AMC, which has turn-on fluorescence. Thus, the measured fluorescence intensity can be used as a readout for the activity of the sirtuin enzyme.
Figure 3The structures of selected SIRT1 activators and SIRT1/2 inhibitors. The first generation SIRT1 activators were discovered from screens of flavonoids natural products. Resveratrol is one of the most potent SIRT1 activators discovered so far, while flavones (quercetin) and isoflavones (daidzein) were also found with SIRT1 activation activity. For sirtuin inhibitors, many synthesized compounds were reported with selective or non-selective sirtuin inhibitory activities.
The fluorescence properties and SIRT1/2 activities of chromenone compounds.
| Compound | Structure | Fluorescence | Activity (10 μM) | |||
|---|---|---|---|---|---|---|
|
|
| φ | SIRT1 | SIRT2 | ||
|
|
| 304 | 400 | 0.16 | 11.60 | 0.87 |
|
|
| - | - | - | 0.76 | 0.72 |
|
|
| - | - | - | 0.95 | 0.83 |
|
|
| - | - | - | 0.82 | 0.47 |
|
|
| - | - | - | 1.21 | 0.75 |
|
|
| - | - | - | 3.22 | 0.80 |
|
|
| - | - | - | 1.10 | 0.86 |
|
|
| - | - | - | 0.89 | 0.80 |
|
|
| - | - | - | 0.65 | 0.81 |
|
|
| - | - | - | 0.82 | 0.76 |
|
|
| - | - | - | 0.90 | 0.79 |
|
|
| - | - | - | 0.92 | 0.79 |
|
|
| 340 | 490 | 0.05 | 0.92 | 0.80 |
|
|
| 338 | 488 | 0.08 | 0.80 | 0.95 |
|
|
| 340 | 490 | 0.03 | 0.87 | 0.83 |
|
|
| - | - | - | 1.00 | 0.72 |
|
|
| 348 | 478 | 0.04 | 0.79 | 0.66 |
|
|
| - | - | - | 0.81 | 0.77 |
|
|
| - | - | - | 1.00 | 0.93 |
|
|
| - | - | - | 0.96 | 0.93 |
|
|
| - | - | - | 0.93 | 0.88 |
Compounds SRT1720 (S1129) and AGK2 (selleckchem, S7577) were used as the reference compounds to evaluate the SIRT1/2 assays.
Figure 4The inhibition mode study of osthole against SIRT2. (A) The measurement of IC50 of osthole against SIRT2. Osthole was used from 0, 0.05, 0.1, 0.16, 0.5, 0.63, 1, 5, 10, 50, 100 µM. (B) The peptide substrate was used at various concentrations (0, 50, 100, 200, 300, 400 and 500 µM) and osthole was used at 0 (◊), 10 µM (△), 20 µM (▽), 40 µM (□) with NAD+ held at 0.5 mM. (C) NAD+ was used at the concentrations (0, 100, 150, 200, 250, 300, 400 and 500 µM) and osthole was used at 0 (◊), 10 µM (△), 20 µM (▽), 40 µM (□) with the peptide substrate held at 0.35 mM. (D,E) Docking study of osthole binding in the active center of SIRT2. (F) The docking study shows that osthole occupy the space of peptide substrates in the active center of SIRT2. The cyan compound represent osthole, the purple compound is the peptide substrate. Accelrys discovery studio visualizer 4.0 and Pymol 0.99 were used for the studied, and crystal structure of SIRT2 was selected as PDB Code: 1j8f.