| Literature DB >> 29721416 |
Brian Nguyen1, Percival J Graham1, Chelsea M Rochman2, David Sinton1.
Abstract
A platform compatible with microtiter plates to parallelize environmental treatments to test the complex impacts of multiple stressors, including parameters relevant to climate change and point source pollutants is developed. This platform leverages (1) the high rate of purely diffusive gas transport in aerogels to produce well-defined centimeter-scale gas concentration gradients, (2) spatial light control, and (3) established automated liquid handling. The parallel gaseous, aqueous, and light control provided by the platform is compatible with multiparameter experiments across the life sciences. The platform is applied to measure biological effects in over 700 treatments in a five-parameter full factorial study with the microalgaeEntities:
Keywords: algae; gradient generators; high‐throughput methods; microdevices; multi‐stressors
Year: 2018 PMID: 29721416 PMCID: PMC5908365 DOI: 10.1002/advs.201700677
Source DB: PubMed Journal: Adv Sci (Weinh) ISSN: 2198-3844 Impact factor: 16.806
Figure 1a) Expanded schematic of the aerogel‐based gas gradient generating method with insets showing model organisms compatible with the setup, from left to right: microalgae, macrophytes, and crustaceans. b) pH‐indicator visualization of the CO2 gradient in a clear 96‐well plate, at increasing concentrations of CO2 the bromothymol blue‐based pH indicator solution turns from blue to yellow due to increasing CO2‐induced acidity. c) Measurement of oxygen concentration at equilibrium at points along an oxygen gradient, markers represent measurements on two separate devices of identical design. The linearity of the gradient and the temporal diffusion profile confirm that the mass transport of gas in the aerogel can be accurately described solely using Fick's laws. d) Measured concentration of a sample point over time after applying gas concentrations showing ≈15 min to reach equilibrium, consistent with a diffusion coefficient of ≈2 × 10−2 cm2 s−1 or one‐tenth of that of open air.
Figure 2CO2 response curves for Chlamydomonas reinhardtii showing the combined effect of CO2 (0–30 000 ppm), temperature (25 and 28 °C), irradiance (30 µmol m−2 s−1 and 60 µmol m−2 s−1), nitrogen (9.4 and 0.94 × 10−3 m NH4Cl starting concentrations) and phosphorus (13.5 × 10−3 and 2.7 × 10−3 m total P starting concentrations). Growth rates were calculated for 4 d of growth. In all cases n = 4 for each condition with the exception of a, b, c, e, p where n = 3 to accommodate “blank” wells. Error bars represent standard deviations in all cases.
Linear model summary, coefficients are linear regression coefficients for a model where C is in percent CO2, P is phosphorus (mM), N is nitrogen in (mM), L is light in µmol m−2 s−1, and T is warming above 25 °C. Example calculation for 30 000 ppm CO2, 13.5 (mM) P, 9.4 (mM) N, 60 µmol m−2 s−1 and 0 °C warming
| Term | Coefficient | Contribution at example value | Std Error |
|
|
|---|---|---|---|---|---|
|
| −5.096E‐02 | 0 | 1.104E‐03 | −4.617E+01 | <0.001 |
|
| 6.004E‐03 | 8.106E‐02 | 3.125E‐04 | 1.921E+01 | <0.001 |
|
| 2.696E‐03 | 2.534E‐02 | 3.913E‐04 | 6.890E+00 | <0.001 |
|
| 5.492E‐03 | 3.295E‐01 | 1.102E‐04 | 4.983E+01 | <0.001 |
|
| 3.140E‐06 | 9.421E‐02 | 1.904E‐07 | 1.649E+01 | <0.001 |
| ( | 3.426E‐09 | −9.839E‐03 | 1.580E‐09 | 2.168E+00 | 0.030248 |
| ( | 5.645E‐08 | −1.018E‐02 | 2.355E‐08 | 2.397E+00 | 0.016605 |
| ( | −2.409E‐03 | 2.940E‐02 | 2.061E‐04 | −1.169E+01 | <0.001 |
| ( | −8.567E‐10 | 1.063E‐02 | 3.773E‐10 | −2.271E+00 | 0.023234 |
| ( | −2.076E‐05 | 1.742E‐02 | 3.222E‐06 | −6.443E+00 | <0.001 |
| ( | −4.128E‐04 | 2.176E‐02 | 4.802E‐05 | −8.596E+00 | <0.001 |
| ( | 5.834E‐05 | −6.013E‐03 | 1.737E‐05 | 3.359E+00 | <0.001 |
| ( | 1.130E‐07 | −1.081E‐02 | 2.980E‐08 | 3.792E+00 | <0.001 |
| ( | 3.932E‐03 | −2.545E‐02 | 2.597E‐04 | 1.514E+01 | <0.001 |
| ( | 6.098E‐08 | −2.151E‐02 | 8.433E‐09 | 7.231E+00 | <0.001 |
| ( | −4.712E‐04 | 1.124E‐02 | 7.331E‐05 | −6.428E+00 | <0.001 |
| ( | 6.994E‐09 | 1.341E‐02 | 2.366E‐09 | 2.957E+00 | 0.003136 |
| ( | 9.337E‐08 | 1.124E‐02 | 3.593E‐08 | 2.599E+00 | 0.0094 |
| ( | 1.899E‐09 | 1.573E‐02 | 5.731E‐10 | 3.314E+00 | <0.001 |
| ( | 3.486E‐05 | 1.953E‐02 | 4.857E‐06 | 7.177E+00 | <0.001 |
| ( | 2.763E‐04 | 9.719E‐03 | 7.268E‐05 | 3.802E+00 | 0.000147 |
| ( | 1.573E‐08 | 1.600E‐02 | 3.017E‐09 | 5.215E+00 | <0.001 |
| ( | 3.205E‐04 | 2.204E‐02 | 2.611E‐05 | 1.227E+01 | <0.001 |
| ( | 4.203E‐08 | 9.892E‐03 | 1.262E‐08 | 3.329E+00 | <0.001 |
| Intercept | 7.160E‐02 | 7.160E‐02 | 3.002E‐02 | 4.483E+01 | <0.001 |
| Growth Rate Estimate | 7.260E‐01 |
Figure 3Images of Lemna gibba cultured for 7 d a) without and b) with the surfactant LAS, a common pollutant. c) Mean frond counts of Lemna gibba after 7 d with and without LAS (n = 5 for treatments with LAS, error bars represent standard deviations) (Images of Lemna gibba cultured for 7 d d) without and e) with titania nanoparticles. f) Mean frond counts of Lemna gibba after 7 d with and without titania nanoparticles (n = 5 for treatments with nanoparticles, error bars represent standard deviations). represents p < 0.05, ** represents p < 0.01 and with a two‐factor ANOVA with Tukey's HSD.
Figure 4a) Representative image of an Artemia salina sub‐adult grown from a nauplius. b) Growth response to CO2 of Artemia salina cultured with live Duniealla salina in brine without titania nanoparticles. Black circles represent mean abdominal lengths; grey squares represent individual abdominal lengths; error bars represent standard deviations. c) Growth response to CO2 of Artemia salina cultured with live Duniealla salina cultured in brine with titania nanoparticles.