Literature DB >> 29698889

Acetylation of oxidized base repair-initiating NEIL1 DNA glycosylase required for chromatin-bound repair complex formation in the human genome increases cellular resistance to oxidative stress.

Shiladitya Sengupta1, Chunying Yang2, Muralidhar L Hegde3, Pavana M Hegde4, Joy Mitra2, Arvind Pandey2, Arijit Dutta5, Abdul Tayyeb Datarwala6, Kishor K Bhakat7, Sankar Mitra8.   

Abstract

Posttranslational modifications of DNA repair proteins have been linked to their function. However, it is not clear if posttranslational acetylation affects subcellular localization of these enzymes. Here, we show that the human DNA glycosylase NEIL1, which is involved in repair of both endo- and exogenously generated oxidized bases via the base excision repair (BER) pathway, is acetylated by histone acetyltransferase p300. Acetylation occurs predominantly at Lys residues 296, 297 and 298 located in NEIL1's disordered C-terminal domain. NEIL1 mutant having the substitution of Lys 296-298 with neutral Ala loses nuclear localization, whereas Lys > Arg substitution (in 3KR mutant) at the same sites does not affect NEIL1's nuclear localization or chromatin binding, presumably due to retention of the positive charge. Although non-acetylated NEIL1 can bind to chromatin, acetylated NEIL1 is exclusively chromatin-bound. NEIL1 acetylation while dispensable for its glycosylase activity enhances it due to increased product release. The acetylation-defective 3KR mutant forms less stable complexes with various chromatin proteins, including histone chaperones and BER/single-strand break repair partners, than the wild-type (WT) NEIL1. We also showed that the repair complex with WT NEIL1 has significantly higher BER activity than the 3KR mutant complex. This is consistent with reduced resistance of non-acetylable mutant NEIL1 expressing cells to oxidative stress relative to cells expressing the acetylable WT enzyme. We thus conclude that the major role of acetylable Lys residues in NEIL1 is to stabilize the formation of chromatin-bound repair complexes which protect cells from oxidative stress.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Acetylation; Base excision repair (BER); Chromatin; NEIL1; Oxidative stress; Repair complex

Mesh:

Substances:

Year:  2018        PMID: 29698889      PMCID: PMC5992913          DOI: 10.1016/j.dnarep.2018.04.001

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  53 in total

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Journal:  Cell Mol Life Sci       Date:  2001-05       Impact factor: 9.261

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Authors:  Anna Portela; Manel Esteller
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3.  The transcriptional coactivators p300 and CBP are histone acetyltransferases.

Authors:  V V Ogryzko; R L Schiltz; V Russanova; B H Howard; Y Nakatani
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

4.  NEIL1 p.Gln282Stop variant is predominantly localized in the cytoplasm and exhibits reduced activity in suppressing mutations.

Authors:  Kazuya Shinmura; Hisami Kato; Yuichi Kawanishi; Masanori Goto; Hong Tao; Yusuke Inoue; Satoki Nakamura; Haruhiko Sugimura
Journal:  Gene       Date:  2015-06-19       Impact factor: 3.688

5.  Prereplicative repair of oxidized bases in the human genome is mediated by NEIL1 DNA glycosylase together with replication proteins.

Authors:  Muralidhar L Hegde; Pavana M Hegde; Larry J Bellot; Santi M Mandal; Tapas K Hazra; Guo-Min Li; Istvan Boldogh; Alan E Tomkinson; Sankar Mitra
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

Review 6.  Transcriptional regulatory functions of mammalian AP-endonuclease (APE1/Ref-1), an essential multifunctional protein.

Authors:  Kishor K Bhakat; Anil K Mantha; Sankar Mitra
Journal:  Antioxid Redox Signal       Date:  2009-03       Impact factor: 8.401

7.  Regulation of signal transducer and activator of transcription 3 enhanceosome formation by apurinic/apyrimidinic endonuclease 1 in hepatic acute phase response.

Authors:  Sutapa Ray; Chang Lee; Tieying Hou; Kishor K Bhakat; Allan R Brasier
Journal:  Mol Endocrinol       Date:  2009-12-23

8.  Human AP endonuclease (APE1/Ref-1) and its acetylation regulate YB-1-p300 recruitment and RNA polymerase II loading in the drug-induced activation of multidrug resistance gene MDR1.

Authors:  S Sengupta; A K Mantha; S Mitra; K K Bhakat
Journal:  Oncogene       Date:  2010-09-20       Impact factor: 9.867

9.  Regulation of oxidized base damage repair by chromatin assembly factor 1 subunit A.

Authors:  Chunying Yang; Shiladitya Sengupta; Pavana M Hegde; Joy Mitra; Shuai Jiang; Brooke Holey; Altaf H Sarker; Miaw-Sheue Tsai; Muralidhar L Hegde; Sankar Mitra
Journal:  Nucleic Acids Res       Date:  2016-10-27       Impact factor: 16.971

10.  Human Apurinic/Apyrimidinic Endonuclease (APE1) Is Acetylated at DNA Damage Sites in Chromatin, and Acetylation Modulates Its DNA Repair Activity.

Authors:  Shrabasti Roychoudhury; Somsubhra Nath; Heyu Song; Muralidhar L Hegde; Larry J Bellot; Anil K Mantha; Shiladitya Sengupta; Sutapa Ray; Amarnath Natarajan; Kishor K Bhakat
Journal:  Mol Cell Biol       Date:  2017-03-01       Impact factor: 4.272

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1.  Recognition of DNA adducts by edited and unedited forms of DNA glycosylase NEIL1.

Authors:  Irina G Minko; Vladimir L Vartanian; Naoto N Tozaki; Erdem Coskun; Sanem Hosbas Coskun; Pawel Jaruga; Jongchan Yeo; Sheila S David; Michael P Stone; Martin Egli; Miral Dizdaroglu; Amanda K McCullough; R Stephen Lloyd
Journal:  DNA Repair (Amst)       Date:  2019-11-02

Review 2.  Noncatalytic Domains in DNA Glycosylases.

Authors:  Natalia A Torgasheva; Evgeniia A Diatlova; Inga R Grin; Anton V Endutkin; Grigory V Mechetin; Ivan P Vokhtantsev; Anna V Yudkina; Dmitry O Zharkov
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Review 3.  Fine-tuning of DNA base excision/strand break repair via acetylation.

Authors:  Kishor K Bhakat; Shiladitya Sengupta; Sankar Mitra
Journal:  DNA Repair (Amst)       Date:  2020-09

4.  Mutation accumulation in cancer genes relates to nonoptimal outcome in chronic myeloid leukemia.

Authors:  Shady Adnan Awad; Matti Kankainen; Teija Ojala; Perttu Koskenvesa; Samuli Eldfors; Bishwa Ghimire; Ashwini Kumar; Soili Kytölä; Mahmoud M Kamel; Caroline A Heckman; Kimmo Porkka; Satu Mustjoki
Journal:  Blood Adv       Date:  2020-02-11

Review 5.  A multi-faceted genotoxic network of alpha-synuclein in the nucleus and mitochondria of dopaminergic neurons in Parkinson's disease: Emerging concepts and challenges.

Authors:  Velmarini Vasquez; Joy Mitra; Haibo Wang; Pavana M Hegde; K S Rao; Muralidhar L Hegde
Journal:  Prog Neurobiol       Date:  2019-12-18       Impact factor: 11.685

6.  Heritable pattern of oxidized DNA base repair coincides with pre-targeting of repair complexes to open chromatin.

Authors:  Albino Bacolla; Shiladitya Sengupta; Zu Ye; Chunying Yang; Joy Mitra; Ruth B De-Paula; Muralidhar L Hegde; Zamal Ahmed; Matthew Mort; David N Cooper; Sankar Mitra; John A Tainer
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

7.  Novel interaction interfaces mediate the interaction between the NEIL1 DNA glycosylase and mitochondrial transcription factor A.

Authors:  Nidhi Sharma; Marlo K Thompson; Jennifer F Arrington; Dava M Terry; Srinivas Chakravarthy; Peter E Prevelige; Aishwarya Prakash
Journal:  Front Cell Dev Biol       Date:  2022-07-22

8.  TRIM26 Maintains Cell Survival in Response to Oxidative Stress through Regulating DNA Glycosylase Stability.

Authors:  Sifaddin M R Konis; Jonathan R Hughes; Jason L Parsons
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  8 in total

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